PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0580s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 226aa    MW: 26051.9 Da    PI: 7.1016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0580s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.8e-0681129255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +  h + Er RR++ ++++  L ++lP++     +K +K +i  +A + I++L+
  SapurV1A.0580s0140.1.p  81 CYQHMMSERLRRQKERNGYLALHSVLPHD-----TKKDKNSIMLMAAKQIQELE 129
                             567999**********************9.....8999999*******999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1076144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.16E-677129No hitNo description
PROSITE profilePS5088811.4279128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-782148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.004585134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDHFFHQQLL QDDVFCYENC PVNQSAFVPY ICRPWGTGSE VGVGSSSMEV HPTNMNKRMI  60
ELVKRSFTVR IETQEPDSKR CYQHMMSERL RRQKERNGYL ALHSVLPHDT KKDKNSIMLM  120
AAKQIQELEM YKEMLKIRND EIEERLAASA IGNDESTQIR IEVANPTSRV DPMIDVLKCL  180
KNLGSKTRSI RSQFSDKELV AVMEIETKIE AAEIENAVKR TLERN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17891KRCYQHMMSERLRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0580s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462136.11e-142transcription factor bHLH92
RefseqXP_024462137.11e-142transcription factor bHLH92
RefseqXP_024462138.11e-142transcription factor bHLH92
RefseqXP_024462139.11e-142transcription factor bHLH92
RefseqXP_024462140.11e-142transcription factor bHLH92
TrEMBLA0A2I4KKB61e-141A0A2I4KKB6_POPTR; BHLH family protein
STRINGPOPTR_0008s16170.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.16e-30bHLH family protein