PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0584s0010.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family E2F/DP
Protein Properties Length: 276aa    MW: 30554.7 Da    PI: 8.9827
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0584s0010.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-2720102271
                 E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                             ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  SapurV1A.0584s0010.4.p  20 SGRGLRQFSMK---VCEKVESkGTTTYNEVADELVAEfadptnsvstpdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 102
                             689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.1E-1221275IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.3E-4616108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-3519102IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-2521102IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-2122103IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.77E-43107210IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.23E-43109219No hitNo description
SMARTSM011381.2E-72109273IPR014889Transcription factor DP, C-terminal
PfamPF087811.3E-41110217IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MISNKKKKRG QRAAGGADKS GRGLRQFSMK VCEKVESKGT TTYNEVADEL VAEFADPTNS  60
VSTPDQQQYD EKNIRRRVYD ALNVLMALDI ISKDKKEIQW KGLPRTSLSD IEELKAERLG  120
LRNRIEKKAA YLQELEEQFV GLQNLIQRNE QLYSSGNAPS GGVSLPFILV QTRPHATVEV  180
EISEDMQLVH FDFNSTPFEL HDDNYVLKAM KFCERPQSNI MAPNPAAGGG GGAGASMSIM  240
YQPQTRSSPV TNNPVRPPTS PPLPGIIKAR VKHEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3918107693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0584s0010.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1819980.0AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds.
GenBankAY3073730.0AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013076.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-138DPB_ARATH; Transcription factor-like protein DPB
TrEMBLB9IFR20.0B9IFR2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12620.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-131Transcription factor DP