PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0584s0010.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family E2F/DP
Protein Properties Length: 255aa    MW: 27629.8 Da    PI: 8.4406
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0584s0010.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.41e-2798180271
                 E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                             ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  SapurV1A.0584s0010.6.p  98 SGRGLRQFSMK---VCEKVESkGTTTYNEVADELVAEfadptnsvstpdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 180
                             689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.5E-1001252IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.2E-4694186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-3597180IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.8E-2699180IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.36E-21100181IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.68E-21185251IPR014889Transcription factor DP, C-terminal
SMARTSM011388.6E-9187252IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.75E-20187250No hitNo description
PfamPF087812.1E-18188250IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVTGGAHLED GDRRPSSATR GGGATTGSWV SGQSVSTSGS VGSPSSRSEH AMATPASDNA  60
FLRLNHLDIH ADDAVTQDAA ANKKKKRGQR AAGGADKSGR GLRQFSMKVC EKVESKGTTT  120
YNEVADELVA EFADPTNSVS TPDQQQYDEK NIRRRVYDAL NVLMALDIIS KDKKEIQWKG  180
LPRTSLSDIE ELKAERLGLR NRIEKKAAYL QELEEQFVGL QNLIQRNEQL YSSGNAPSGG  240
VSLPFILVQV KHFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3996185693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0584s0010.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1819980.0AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds.
GenBankAY3073730.0AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013076.11e-160PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-122DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A3N7G5C91e-151A0A3N7G5C9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s09640.11e-152(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-100Transcription factor DP