PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0586s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 537aa    MW: 59675.5 Da    PI: 8.7831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0586s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-184792248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +WT +Ed++l+davk++ +++Wk+Ia++++  Rt+ qc +rwqk+l
  SapurV1A.0586s0030.1.p 47 SKWTGDEDKILADAVKRYNSRNWKKIAECVP-DRTDVQCLHRWQKVL 92
                            58*****************************.************986 PP
2Myb_DNA-binding58.31.7e-1898144148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g+W +eEd+l+ ++v+ +G++ W+ Ia++++ gR +kqc++rw+++l
  SapurV1A.0586s0030.1.p  98 KGPWKKEEDDLIRELVETHGNKKWSQIAKHLP-GRIGKQCRERWHNHL 144
                             79******************************.*************97 PP
3Myb_DNA-binding47.93e-15150192145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             r +WT+eE+ +l++a+  +G++ W+ Ia+ +  gRt++++k++w+
  SapurV1A.0586s0030.1.p 150 RTSWTKEEEGILIKAHGAYGNK-WAEIAKLLH-GRTENSIKNHWN 192
                             679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6494192IPR017930Myb domain
SuperFamilySSF466895.67E-164198IPR009057Homeodomain-like
SMARTSM007177.1E-154594IPR001005SANT/Myb domain
PfamPF002494.1E-164792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2248108IPR009057Homeodomain-like
CDDcd001672.32E-134892No hitNo description
PROSITE profilePS5129431.74193148IPR017930Myb domain
SuperFamilySSF466891.04E-2995191IPR009057Homeodomain-like
SMARTSM007178.5E-1897146IPR001005SANT/Myb domain
CDDcd001672.92E-15100144No hitNo description
PfamPF139211.1E-18101158No hitNo description
Gene3DG3DSA:1.10.10.606.7E-28109151IPR009057Homeodomain-like
PROSITE profilePS5129418.675149199IPR017930Myb domain
SMARTSM007173.4E-14149197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-21152199IPR009057Homeodomain-like
CDDcd001672.55E-10152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MVEVKEINSN SKTKGLVYWT GLVPHGGIRN AIQNQQGRIT GPARRSSKWT GDEDKILADA  60
VKRYNSRNWK KIAECVPDRT DVQCLHRWQK VLDPKLVKGP WKKEEDDLIR ELVETHGNKK  120
WSQIAKHLPG RIGKQCRERW HNHLNPDINR TSWTKEEEGI LIKAHGAYGN KWAEIAKLLH  180
GRTENSIKNH WNCSVRKRIE SYPARGLDLY SYRTEADGKK LEVGKQRNDR GMNLCSNVEP  240
CSLDLVLGNV GRREGQSVAP DNEICKEWND SAKSTGRTIS TKATDACGLS SQDCRESASS  300
AYTSESTDHS SINQPGNICD ISFGGLMRSP NSQERTHETA NTVDSLPSEA LSSSLDLSLS  360
TPFRARGYDE TMDEHEKNIG AGGPNTSDKL HHGLCYESLQ LKDLNVFPET GSFPSTDCYI  420
GGPGSFSTPV SRNRVSPNSS SPESRLRSKA RSFKSTPSII RKRSSVALRQ AGSSDKDDNG  480
LRSLGSCSSD KDGDDYVDLL NKKQLFLSPP KSNKLETSEG MKSVEKRLED AFNIQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-63331997159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-63331997159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0586s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320778.30.0transcription factor MYB3R-2
TrEMBLA0A2K1XS630.0A0A2K1XS63_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.16e-83Homeodomain-like protein