PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0589s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 234aa    MW: 27096.2 Da    PI: 5.7092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0589s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.7e-141057148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W +eEde+l    ++lG + W++Ia   g+ R++k+c+ rw++yl
  SapurV1A.0589s0170.1.p 10 KGSWLEEEDERLTAFATLLGERKWDSIAILSGLMRSGKSCRMRWLNYL 57
                            799*******************************************97 PP
2Myb_DNA-binding51.91.7e-1663108148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg  ++eE+++ ++++ q+G++ W++Iar+++ gRt++++k++w+++l
  SapurV1A.0589s0170.1.p  63 RGHISAEEEQIVIQLHGQWGNK-WARIARRLP-GRTDNEIKNYWRTHL 108
                             67779*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.71557IPR017930Myb domain
SuperFamilySSF466895.5E-258104IPR009057Homeodomain-like
SMARTSM007171.9E-9959IPR001005SANT/Myb domain
PfamPF002494.1E-111057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-171164IPR009057Homeodomain-like
CDDcd001671.03E-61257No hitNo description
PROSITE profilePS5129426.42458112IPR017930Myb domain
SMARTSM007179.2E-1662110IPR001005SANT/Myb domain
PfamPF002491.8E-1463108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2465111IPR009057Homeodomain-like
CDDcd001676.63E-1167108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAYQGDKLRK GSWLEEEDER LTAFATLLGE RKWDSIAILS GLMRSGKSCR MRWLNYLRPN  60
LKRGHISAEE EQIVIQLHGQ WGNKWARIAR RLPGRTDNEI KNYWRTHLRK KTREEGNSQS  120
KVYSSKPELL YQNGDSTSAW KYSIRDYNSA DDHIIGPTDF SLEHYELPCM TCLNSSYETR  180
LYEWIPKLSN DQSQAEIQGE GNGLDWCFCD PAWNSEDCDP STVDSLGSLW DMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2481122105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-23811256159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-23811256159MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-24811225128MYB TRANSFORMING PROTEIN
1mse_C4e-2481122105C-Myb DNA-Binding Domain
1msf_C4e-2481122105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0589s0170.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381383.21e-142transcription factor MYB27 isoform X2
RefseqXP_024460171.11e-142transcription factor MYB27 isoform X1
SwissprotQ9SCP11e-56MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A2K2A1011e-140A0A2K2A101_POPTR; Uncharacterized protein
TrEMBLA0A3N7F8B71e-140A0A3N7F8B7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12400.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.14e-59myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]