PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0608s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31496.6 Da    PI: 8.5723
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0608s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.1e-19136190256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  SapurV1A.0608s0240.1.p 136 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 190
                             788899***********************************************98 PP
2HD-ZIP_I/II125.42.5e-40136225191
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke +eL
  SapurV1A.0608s0240.1.p 136 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEMDCEILKKCCESLTDENRRLQKELQEL 222
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reel 91 
                             + +l
  SapurV1A.0608s0240.1.p 223 K-SL 225
                             9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-18123186IPR009057Homeodomain-like
SuperFamilySSF466897.1E-19125193IPR009057Homeodomain-like
PROSITE profilePS5007117.653132192IPR001356Homeobox domain
SMARTSM003893.3E-16134196IPR001356Homeobox domain
PfamPF000463.1E-16136190IPR001356Homeobox domain
CDDcd000861.04E-16136193No hitNo description
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
SMARTSM003404.7E-24192235IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-10192225IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGWLDDGCNT GLVLGLGFTT TSLENTSNPA DHNNNRLMKP QIKPLMTGFE PSLSLGLSSD  60
QTYSQKTAMD GKRSGCEEPV VRAHDQLYRQ ASPHSAVSSF SSGRVKRERD LSSEEIEVER  120
VSSRVSDEDE DGTNARKKLR LTKEQSALLE ESFKQHSTLN PKQKQALARQ LNLRPRQVEV  180
WFQNRRARTK LKQTEMDCEI LKKCCESLTD ENRRLQKELQ ELKSLKMAQP FYMHMPAATL  240
TMCPSCERIG GVGEGASKSP FSMTTKPHFY NSFTNPSAAC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0608s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310877.20.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-105HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLB9HFT70.0B9HFT7_POPTR; HD-ZIP family protein
STRINGPOPTR_0007s14590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.18e-81HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]