PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0610s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 109aa    MW: 12332.7 Da    PI: 5.6949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0610s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-105998344
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                             ++++E  l+++ +++ G++ W++Ia +++ gRt++++ ++w
  SapurV1A.0610s0050.1.p 59 DFSEDEVSLIARMFRLVGKR-WSLIAGRIP-GRTAEEIENYW 98
                            699*****************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.67E-94999IPR009057Homeodomain-like
PROSITE profilePS5129410.36452106IPR017930Myb domain
SMARTSM007177.0E-856104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-125999IPR009057Homeodomain-like
PfamPF002494.7E-95998IPR001005SANT/Myb domain
CDDcd001679.11E-96098No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MADSGHTSNY TDQDTKGHFS FPFLFLGSPI YYTMVLFSDM DCFVSDAKSS ANQDSNLQDF  60
SEDEVSLIAR MFRLVGKRWS LIAGRIPGRT AEEIENYWTA KNRSSKQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0610s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037641.13e-32PREDICTED: MYB-like transcription factor ETC1
TrEMBLA0A2K2ANG31e-30A0A2K2ANG3_POPTR; MYB-like family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26923178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.17e-18MYB_related family protein