PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0613s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 326aa    MW: 36559.3 Da    PI: 6.519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0613s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13127178155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  SapurV1A.0613s0120.1.p 127 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 178
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.59E-14125182No hitNo description
SuperFamilySSF474596.54E-16126188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-13126181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MELEAVVYSQ DPFAYGCMDS YSVAGGGGAW DYDFEWQDKA FHGILENNSI EQQGLHANWD  60
SPSPPLMQQE KEWDRRNLSS PGTCNGDQSI QGILFPSIME PAPVTATNRR KRRRTKSSKN  120
KEEIENQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYVQR GDQASIIGGA INFVKELEHL  180
LQSMGTNKKN KQQPDVNGFS SRPFADFFTF PQISTRATQP SAMEGESVAG QNQWAVGEIE  240
VTMVESHANL KILSKKRPRQ LLKLVVGLQN LRLSVLHLNV ITDDQMVLYS VSVKVEEGCH  300
LSTVDEIAAA VNHMLYRVEE ATAFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109113RKRRR
2109114RKRRRT
3127138RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0613s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016877.10.0PREDICTED: transcription factor bHLH94
SwissprotQ9C7T42e-92BH096_ARATH; Transcription factor bHLH96
TrEMBLB9GV130.0B9GV13_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]