PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0617s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24587.8 Da    PI: 9.9136
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0617s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1869121456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             + ++t++q++ Le+ F +nr++  e +++LA++lg++ rq+++W+qN+Ra++k
  SapurV1A.0617s0090.1.p  69 KKRLTQDQVRLLERTFTSNRKLEPELKAQLANQLGVPPRQISIWYQNKRARWK 121
                             5569************************************************9 PP
2HD-ZIP_I/II106.52e-3468159293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             +k+rl+++qv+lLE++F++++kLepe K++la++Lg+ prq+ +W+qn+RAR+kt++lE dy++L+ +++++ ++++rLe+ev++L+
  SapurV1A.0617s0090.1.p  68 RKKRLTQDQVRLLERTFTSNRKLEPELKAQLANQLGVPPRQISIWYQNKRARWKTQNLELDYNTLHLKLENVLADRRRLEREVAQLQ 154
                             8************************************************************************************** PP

             HD-ZIP_I/II  89 eelke 93 
                             eel++
  SapurV1A.0617s0090.1.p 155 EELRR 159
                             *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.13163123IPR001356Homeobox domain
SuperFamilySSF466892.52E-1765132IPR009057Homeodomain-like
SMARTSM003899.9E-1566127IPR001356Homeobox domain
PfamPF000468.7E-1668121IPR001356Homeobox domain
CDDcd000861.53E-1368124No hitNo description
Gene3DG3DSA:1.10.10.609.1E-1970130IPR009057Homeodomain-like
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTHLTLYESS NPKKAAYKKG NELIIFVNQR YFLYNYFPQL DPPTSKSMNL FHSQNQQLSK  60
HQNSSSSRKK RLTQDQVRLL ERTFTSNRKL EPELKAQLAN QLGVPPRQIS IWYQNKRARW  120
KTQNLELDYN TLHLKLENVL ADRRRLEREV AQLQEELRRA QQMVLDLNRG PAQPPVHVSS  180
NSSLDEEAGG EVLQLDELYA CWYSASGSAW G*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0617s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029534.11e-92PREDICTED: homeobox-leucine zipper protein ATHB-52-like
SwissprotQ9FN293e-43ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A3N7HFD28e-88A0A3N7HFD2_POPTR; Uncharacterized protein
STRINGPOPTR_0011s11510.11e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-45homeobox protein 52