PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0618s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 116aa MW: 13401.4 Da PI: 8.4593

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0618s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34	5e-11	10	101	8	94
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.s 88 s + ++rl +p + ++++++++ +++ + +e ++ ++W+++l++r+ + v+t+ W +Fv+++gLk+gD + + +++ + SapurV1A.0618s0050.1.p 10 SRTDIECRLAFPTSSLSAFSMPE-GETAVYFEATDTieKKWNFRLSIRGENDPytkPVITGDWLQFVRDKGLKVGDKMFLWREEGaT 95 55566799******9997765.55688888877777***9855544444689****************98877554445 PP EE..EE CS B3 89 efelvv 94 + +++v SapurV1A.0618s0050.1.p 96 GVRYTV 101 555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.868	3	105	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-12	4	95	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.8E-4	5	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.45E-12	6	93	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.68E-14	7	105	No hit	No description
Pfam	PF02362	9.6E-8	13	102	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MEVLMEKILS RTDIECRLAF PTSSLSAFSM PEGETAVYFE ATDTIEKKWN FRLSIRGEND 60 PYTKPVITGD WLQFVRDKGL KVGDKMFLWR EEGATGVRYT VRAERKIFRV WANVQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0618s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028527.1	2e-37	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A3N7G753	8e-66	A0A3N7G753_POPTR; Uncharacterized protein
STRING	POPTR_0004s23010.1	3e-36	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11016	3	36

Link Out ? help Back to Top
Phytozome	SapurV1A.0618s0050.1.p