PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0618s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 101aa    MW: 11346.2 Da    PI: 9.8537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0618s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-10496197
                            EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                            f+k+l   +v  +++lvlp++  ++     g++   + ++    +g + +v++  ++k gr++lt+GW e ++  +L++gD+v ++  +
  SapurV1A.0618s0080.1.p  4 FIKKL--TSVDLERQLVLPNNTKTDAlqfRGPEDIVIPIM-FGHDGVKVDVRC--SRKEGRHILTEGWVEIARNLRLNAGDVVALR--K 85
                            78888..445555569***998555566655544433344.45799*******..*******************************..4 PP

                            SSEE..EEEEE CS
                      B3 87 rsefelvvkvf 97
                            ++++++++ v+
  SapurV1A.0618s0080.1.p 86 EDNGRYKMIVR 96
                            45665555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.84E-11396IPR015300DNA-binding pseudobarrel domain
CDDcd100178.34E-9397No hitNo description
Gene3DG3DSA:2.40.330.102.5E-11396IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-8494IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MEIFIKKLTS VDLERQLVLP NNTKTDALQF RGPEDIVIPI MFGHDGVKVD VRCSRKEGRH  60
ILTEGWVEIA RNLRLNAGDV VALRKEDNGR YKMIVRSGSA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0618s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3N7EV092e-34A0A3N7EV09_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23030.11e-29(Populus trichocarpa)