PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0618s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 118aa    MW: 13794.7 Da    PI: 10.6998
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0618s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-14696189
                            EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                            f k l  s + +++rl++p   + e+    g+++  + +  +d++ ++W ++l++  ++++++  v+t+ W +Fvk++gL++gD +vF+
  SapurV1A.0618s0120.1.p  6 FTKLL--SPTDTTHRLTVPMANLGEFefpTGQHA--INIEATDTTEQQWIFRLSIrrNNNPNSrPVFTGRWIRFVKEKGLRAGDRIVFS 90
                            67777..77788899********99987755544..5688889**********88775555557************************* PP

                            E-SSSE CS
                      B3 84 ldgrse 89
                            +++ ++
  SapurV1A.0618s0120.1.p 91 RQQAEG 96
                            876644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-15394IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-19399IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.0514107IPR003340B3 DNA binding domain
CDDcd100178.51E-164107No hitNo description
SMARTSM010190.00126109IPR003340B3 DNA binding domain
PfamPF023621.4E-10697IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEQHCFTKLL SPTDTTHRLT VPMANLGEFE FPTGQHAINI EATDTTEQQW IFRLSIRRNN  60
NPNSRPVFTG RWIRFVKEKG LRAGDRIVFS RQQAEGDGVQ YRIRAERKIF KYWVNVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0618s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028527.13e-64PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2K2AYH52e-63A0A2K2AYH5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23010.15e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.16e-08B3 family protein