PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0618s0160.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 116aa MW: 13583.4 Da PI: 10.5479

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0618s0160.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.8	1.3e-15	5	95	1	89
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvv 81 f k l s + +s+rl++pk + ++ g+++ + + ++d++ ++W++kl++ +++ v+t+ W +Fv+++gL++gD +v SapurV1A.0618s0160.1.p 5 FTKLL--SPTDTSHRLTIPKANFGDFefpTGQHA--TNIEFTDTTEQQWTFKLSIrrNNH--PnprPVFTGQWIRFVREKGLRAGDRIV 87 67778..88888999***99989988755544..469**********8854333..34589****************** PP EEE-SSSE CS B3 82 Fkldgrse 89 F+ + + + SapurV1A.0618s0160.1.p 88 FSKKTEGD 95 443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.9E-20	2	102	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.16E-17	3	105	No hit	No description
PROSITE profile	PS50863	9.855	3	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.72E-16	3	95	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.3E-11	5	96	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-8	5	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MEHLFTKLLS PTDTSHRLTI PKANFGDFEF PTGQHATNIE FTDTTEQQWT FKLSIRRNNH 60 PNPRPVFTGQ WIRFVREKGL RAGDRIVFSK KTEGDGVLYR IRAEREIFHL WINVQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0618s0160.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028527.1	1e-57	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A2K2AYH5	9e-57	A0A2K2AYH5_POPTR; Uncharacterized protein
STRING	POPTR_0004s23010.1	3e-57	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11016	3	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01500.1	2e-11	B3 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0618s0160.1.p