PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0618s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 122aa    MW: 13943.2 Da    PI: 10.2705
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0618s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.43.9e-166103196
                             EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvF 82 
                             f+k+l++ dv    r+v+p + + ++   +g+   sk++ + d +  +W+++++ rk++ +   vl++GW +Fvk++gLkegD v+F
  SapurV1A.0618s0190.1.p   6 FDKTLSKTDVEY--RMVIPMDRLPAFripEGE--FSKKVDVFDNNCCRWSFRCSKRKNDAHpkPVLSSGWIKFVKEKGLKEGDQVIF 88 
                             889997777776..58******9999655433..7899***************8888877799************************ PP

                             EE-SS.SEE..EEEE CS
                      B3  83 kldgr.sefelvvkv 96 
                             +++++   + l +++
  SapurV1A.0618s0190.1.p  89 SVSDKdGAGGLQFGI 103
                             *88655666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-173104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-15488No hitNo description
PROSITE profilePS5086310.2214107IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-16494IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00146115IPR003340B3 DNA binding domain
PfamPF023622.9E-136103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MTKRLFDKTL SKTDVEYRMV IPMDRLPAFR IPEGEFSKKV DVFDNNCCRW SFRCSKRKND  60
AHPKPVLSSG WIKFVKEKGL KEGDQVIFSV SDKDGAGGLQ FGIQARKRVK LFGQDLWSDP  120
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0618s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455035.14e-57putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLB9GZ484e-48B9GZ48_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00450.17e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-07related to ABI3/VP1 1