PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0618s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 122aa    MW: 14012.3 Da    PI: 10.5247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0618s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-13697190
                            EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84
                            f+k+l++ dv    r+ +p + + ++   +gk   sk++ + d + r W+++++ r+k+ +   vl++GW +Fvk+++L+egD v+ ++
  SapurV1A.0618s0200.1.p  6 FDKTLSKTDVEY--RMAIPMDSLPAFripEGK--FSKKVDVFDNNCRPWSFRCSTRRKDPHpkPVLSSGWIKFVKEKRLQEGDKVIVSV 90
                            889997777776..58******9999766555..7899***************88777777899**********************997 PP

                            -SS.SEE CS
                      B3 85 dgr.sef 90
                            +++   +
  SapurV1A.0618s0200.1.p 91 SDKdGAE 97
                            7553444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-163103IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-13487No hitNo description
PROSITE profilePS508638.984107IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-14495IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-106103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MTKRLFDKTL SKTDVEYRMA IPMDSLPAFR IPEGKFSKKV DVFDNNCRPW SFRCSTRRKD  60
PHPKPVLSSG WIKFVKEKRL QEGDKVIVSV SDKDGAEGLQ FGIQARKRVK LFGHDIWSDP  120
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0618s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455035.14e-60putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLB9GZ485e-48B9GZ48_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00450.19e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-06B3 family protein