PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0618s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 122aa    MW: 14326.4 Da    PI: 8.7063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0618s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-156100193
                             EEEE-..-HHHHTT-EE--HHH.HTT---...--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkke.esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                             f+k+l++ dv+   r+ +p + ++++++++e  sk++ + d + r+W+++++ rk++ r   vl++GW +++k+++LkegD v+F++
  SapurV1A.0618s0210.1.p   6 FEKTLSKTDVSY--RMAIPLDSLSAFEIPEEeYSKKVDVFDIDCRRWSFRCSTRKNDPRpkPVLSSGWIQYAKEKRLKEGDRVIFSV 90 
                             899997777776..58*******999544442789****************9988888899*************************7 PP

                             -SS.SEE..E CS
                      B3  85 dgr.sefelv 93 
                             +++  ++ l 
  SapurV1A.0618s0210.1.p  91 SDKdGDEGLE 100
                             7543444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-17394IPR015300DNA-binding pseudobarrel domain
CDDcd100177.27E-16488No hitNo description
SuperFamilySSF1019362.75E-15493IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.9396107IPR003340B3 DNA binding domain
PfamPF023622.4E-126103IPR003340B3 DNA binding domain
SMARTSM010195.3E-56109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MTRRLFEKTL SKTDVSYRMA IPLDSLSAFE IPEEEYSKKV DVFDIDCRRW SFRCSTRKND  60
PRPKPVLSSG WIQYAKEKRL KEGDRVIFSV SDKDGDEGLE FEIQARKRLR LFGQELWSDL  120
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0618s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455035.16e-58putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLB9GZ481e-47B9GZ48_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00450.12e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-08related to ABI3/VP1 1