PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0618s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 122aa    MW: 14301.5 Da    PI: 10.1069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0618s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.7e-176101194
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 
                             f+k+l++ dv  +  +++p + ++++    ++e sk++ + d + r+W+++++ rk++ +   vl++GW +Fvk++ LkegD v+F+
  SapurV1A.0618s0230.1.p   6 FEKTLSKTDVEYR--IRIPMESISAFriP-EEEYSKKVDVFDIHCRRWSFRCSTRKNDPHpkLVLSSGWIRFVKEKSLKEGDQVIFS 89 
                             8999977777765..79******999642.345789****************9988888799************************* PP

                             E-SS.SEE..EE CS
                      B3  84 ldgr.sefelvv 94 
                             ++++   + l +
  SapurV1A.0618s0230.1.p  90 VSDKdGAEGLQF 101
                             876535554555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-193105IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-17488No hitNo description
PROSITE profilePS5086310.5464107IPR003340B3 DNA binding domain
SuperFamilySSF1019364.97E-17498IPR015300DNA-binding pseudobarrel domain
PfamPF023629.4E-156103IPR003340B3 DNA binding domain
SMARTSM010195.8E-66107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MTRRLFEKTL SKTDVEYRIR IPMESISAFR IPEEEYSKKV DVFDIHCRRW SFRCSTRKND  60
PHPKLVLSSG WIRFVKEKSL KEGDQVIFSV SDKDGAEGLQ FGIQARKRAK LFGQEFWTDP  120
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0618s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455035.15e-62putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLB9GZ481e-52B9GZ48_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00450.12e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-08related to ABI3/VP1 1