PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0619s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 706aa    MW: 76463.2 Da    PI: 6.3716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0619s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06279299526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C+ f++ G C+ Gd C +aHg
  SapurV1A.0619s0110.1.p 279 PCPEFRK-GSCRQGDACEYAHG 299
                             8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.22E-1534150IPR020683Ankyrin repeat-containing domain
PfamPF127961.7E-971144IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1575155IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.717599IPR002110Ankyrin repeat
PROSITE profilePS5029716.83975150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.005575105IPR002110Ankyrin repeat
CDDcd002042.07E-1477150No hitNo description
PROSITE profilePS5008811.968110145IPR002110Ankyrin repeat
SMARTSM002480.0023110142IPR002110Ankyrin repeat
SMARTSM003561.0E-4274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662279301IPR000571Zinc finger, CCCH-type
SMARTSM0035639309332IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.709309333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MFSVSKRKPT HTGFSMENEF QKEDGVRNDF SRLLELSASN DLIGFKRAIE EEGHDVDEPG  60
LWYGRRIGSK KMGFEERTPL MIAALYGSKE VLDYILETGH VDVNRGYGSD GATALHCAAA  120
GGSSSAPEVA RLLLDASADP NSVDANGNHP GDLIASVVES GSNSRRKNLE IVLKGGSGGE  180
ESCVLAYQIV NEMDGLEQQE ISTPRVSKDG SEKKEYPIDL TLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDACEYAHGI  300
FECWLHPAQY RTRLCKDETG CARRVCFFAH KPEELRPLYA STGSAVPSPR SYSTNGSTLD  360
MSSISPLSLG SPSVLMPSKS TPPASSGSSS PVGGWTNHSN VVPPALQLPG SRLKSALCAR  420
DMDFDMELLG LESHRRRQQF IDEISGLSSP SSWNNGLSTA AAFAGSGDRT VELNRLGGVR  480
PTNLEDIFGS LDPSILPQLQ GLSLDAAVAH LQPPTGMQMR QNINQQLRSS YPTSSFSSSP  540
VRRSSFGVDH SGGAAAAVLS SRSSAFAKRS QSFVERNAVN RHTGFSSPSS SANIMPSNLS  600
DWGSPDGKLD WGIQAEDLNK LRKSASFGFR SNGSSFAAAD SVPTTVDEPD VSWVQSVVKD  660
TPPAKAGPLG FEEQQKQQCH LNIGGSETLP AWAEQLYLEQ KPLVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0619s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0286471e-93CT028647.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314096.30.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2K1Z2T30.0A0A2K1Z2T3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein