PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0620s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 438aa    MW: 48103.3 Da    PI: 5.5464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0620s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-1974132155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             ++y+GVr++  +g+WvAeIr+p++ g    kr  r +lg+f ta eAa+a++ a+++++g
  SapurV1A.0620s0100.1.p  74 CRYRGVRQRT-WGKWVAEIREPVKKGsitkKRgNRLWLGTFSTAIEAARAYDYAARAMYG 132
                             78*****999.**********877555886558************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1274132IPR001471AP2/ERF domain
CDDcd000181.62E-1874142No hitNo description
SuperFamilySSF541717.85E-2075142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-3075141IPR001471AP2/ERF domain
PROSITE profilePS5103223.40675140IPR001471AP2/ERF domain
SMARTSM003802.6E-3475146IPR001471AP2/ERF domain
PRINTSPR003679.9E-107687IPR001471AP2/ERF domain
PRINTSPR003679.9E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSVDMEDSSR QSSLPGCSSK NKKKWRGRRN GCESIEDTIA RWKKHNKLQI NKVPGKGSKK  60
GCMKGKGGPE NNSCRYRGVR QRTWGKWVAE IREPVKKGSI TKKRGNRLWL GTFSTAIEAA  120
RAYDYAARAM YGPNAILNFP DNSHESGDQQ DSLSSSATAT ETASTGSKTT LVNYEDFKVG  180
KLKVGYCGSR VVNKESGCSG ISAVNKSGEE ADKFRVAECS GRGVKDGEWN LADDWMSSRH  240
VEAEAPVLRR EMDGELAEIV ESCCHGINDR NDFLQNETAS VECLYSDMET DRKPFYDAQM  300
PLTTKATGVE FSGMGFSNFN NQFEVGHDQL NEGLCDPEMD TKPFSHGVSD IPALKGEGNY  360
EYVHSDVHAA SQLQSGRPPE LASQLQPPGN NPSGSLSYIQ EADLGGGCNF DLSNPDINWG  420
LVGEQELLDP WFPELQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1776140360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-17751401472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0620s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443492.10.0dehydration-responsive element-binding protein 2B isoform X2
TrEMBLA0A2K1XET50.0A0A2K1XET5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s13380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.14e-23ERF family protein