PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0625s0060.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 446aa MW: 51115.6 Da PI: 6.631

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0625s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.5	2.7e-26	119	215	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 +Wt+++v++Li+a+++++e+ +++ +kk++W++vsk+m+ergf++sp+qC++k+++lnkryk+++++ +++ ++++ SapurV1A.0625s0060.1.p 119 KWTDKMVRLLITAVSYIGEDATSDCgggirrrfivlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQV 205 7********************9999999999999********************************************56999 PP trihelix 76 sstcpyfdql 85 +++ +++d + SapurV1A.0625s0060.1.p 206 VENPALLDVI 215 9888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.6E-24	117	242	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MAGNLSQGGM IPGGAPFGGP DLQGSMRVHH QGQHTMHHHQ HPLHRHGSST HPSDHDGFPL 60 TMEAMHNSDQ NMSMADYNKG DGRKNSASDE DEPSYTEEGA DGHNDVSRGK KGTSWHRVKW 120 TDKMVRLLIT AVSYIGEDAT SDCGGGIRRR FIVLQKKGKW KSVSKVMAER GFHVSPQQCE 180 DKFNDLNKRY KRLNDMLGRG TSCQVVENPA LLDVIDYLTE KEKDDVRKIL SSKHLFYEEM 240 CSYHNGNRLH LPHDPALQRS LQLALRSRDD HDNDDVRRYQ HDDLDEDDQE IETDDHDEFG 300 ENHASHGDSR GIHEVLGGSA KRPRLGQGHE DACFGNLSQD HNKGSSYSHP QIALVDMNQV 360 SPESSRAAWL QKQWMESRTL QLEEQNLKIQ QEMLELEKQR FKWQRFSKKR DRELEKLRME 420 NERMKLENER LALELKRKEM GADFN*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MAGNLSQGGM IPGGAPFGGP DLQGSMRVHH QGQHTMHHHQ HPLHRHGSST HPSDHDGFPL  60
TMEAMHNSDQ NMSMADYNKG DGRKNSASDE DEPSYTEEGA DGHNDVSRGK KGTSWHRVKW  120
TDKMVRLLIT AVSYIGEDAT SDCGGGIRRR FIVLQKKGKW KSVSKVMAER GFHVSPQQCE  180
DKFNDLNKRY KRLNDMLGRG TSCQVVENPA LLDVIDYLTE KEKDDVRKIL SSKHLFYEEM  240
CSYHNGNRLH LPHDPALQRS LQLALRSRDD HDNDDVRRYQ HDDLDEDDQE IETDDHDEFG  300
ENHASHGDSR GIHEVLGGSA KRPRLGQGHE DACFGNLSQD HNKGSSYSHP QIALVDMNQV  360
SPESSRAAWL QKQWMESRTL QLEEQNLKIQ QEMLELEKQR FKWQRFSKKR DRELEKLRME  420
NERMKLENER LALELKRKEM GADFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0625s0060.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044210.1	0.0	PREDICTED: uncharacterized protein LOC105139468
TrEMBL	A0A3N7F618	0.0	A0A3N7F618_POPTR; Uncharacterized protein
STRING	POPTR_0002s06930.1	0.0	(Populus trichocarpa)
STRING	POPTR_0005s21390.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-158	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	SapurV1A.0625s0060.1.p