PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0625s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 595aa    MW: 66478.2 Da    PI: 6.4139
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0625s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.43.9e-2864147186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW++qe+laL++ r+ m+  +r+++lk+plWe+vs+k++e g++rs+k+Ckek+enl k++k+ikeg+ ++++++  t+++f +le
  SapurV1A.0625s0080.1.p  64 RWPRQETLALLKTRSAMDAVFRDSSLKGPLWEDVSRKLAELGYHRSAKKCKEKFENLYKYHKRIKEGRTDKSEGK--TYKFFYELE 147
                             8*********************************************************************75555..69***9998 PP
2trihelix101.56.5e-32409494187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k ev+aLi++r +++ ++r++ +k+plWe++s+ m++ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyfdql+a
  SapurV1A.0625s0080.1.p 409 RWPKAEVQALINLRVNLHIKYRENGAKGPLWEDISAGMQKLGYNRSSKRCKEKWENINKYFKKVKESNRKR-PEDSKTCPYFDQLDA 494
                             8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.80657121IPR017877Myb-like domain
SMARTSM007170.5261123IPR001005SANT/Myb domain
PfamPF138376.7E-1963148No hitNo description
CDDcd122034.68E-2363128No hitNo description
SMARTSM007170.037406468IPR001005SANT/Myb domain
PfamPF138375.6E-22408495No hitNo description
Gene3DG3DSA:1.10.10.604.9E-4408465IPR009057Homeodomain-like
PROSITE profilePS500907.097408466IPR017877Myb-like domain
CDDcd122034.90E-26408473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MLGDSSLVAT SSDVETTATS VVPEEGGQVC EVGGAGGFGS NSTEEDKNTG VDHKADQMNY  60
GANRWPRQET LALLKTRSAM DAVFRDSSLK GPLWEDVSRK LAELGYHRSA KKCKEKFENL  120
YKYHKRIKEG RTDKSEGKTY KFFYELEAFQ NHHSHSAQSP TKLPPPLPPP KAQTPTATTA  180
TLAWTTTGPA IVSHVTVPST TSPIDIMSQG IGTPATIHTI NAMPLSSNYL NPSQNTSPSS  240
LQNLVTHLFS SSTSSSTASD EKMEGGRKRK RKRNWKDFFL RLTRDVIKKQ EDLQKRFLET  300
VDKCEHERMS SEEAWRMKEI ARMNREHEAL IQERSMAASK DAAFLAFLQK ITGQQNSTET  360
QAIPQPKLTP PPPQPPQPRP RPSSLATATN LEVSKWDNGE NVTTPSSSRW PKAEVQALIN  420
LRVNLHIKYR ENGAKGPLWE DISAGMQKLG YNRSSKRCKE KWENINKYFK KVKESNRKRP  480
EDSKTCPYFD QLDALYKEKN IMESVVSTGY DVKPISTMEP LMVLPEQQLP FEHANLPETI  540
IEDNERDINF DPNIEEDDEI YDDGGGGGDT EQEEDEGGDF EVAAHKPASL GNGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271RKRKRK
2266272RKRKRKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0625s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307497.10.0trihelix transcription factor GT-2
SwissprotQ391171e-136TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLB9H7S10.0B9H7S1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s21420.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-84Trihelix family protein