PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0639s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 468aa    MW: 53894.9 Da    PI: 6.8795
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0639s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.12.7e-2490190186
                trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 
                             +Wt+++v++Li a+ +++++++++               +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +
  SapurV1A.0639s0010.2.p  90 KWTDHMVRLLIMAVFYIGDEIGSEGsdpigkkkpgglaqQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtA 176
                             7****************9999975335566667777777**********************************************55 PP

                trihelix  73 sessstcpyfdqle 86 
                             ++++++  ++d ++
  SapurV1A.0639s0010.2.p 177 CRVVENQNLLDTMD 190
                             9*****99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-2188213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLGLELPLHP PENSQNPNHL HHPQVVAYSH HESDNRQHSQ QSVKHAYPYA SSSKPKLLLS  60
PLSDEDEPSF TGDDSTTDGK RKMSPWQRMK WTDHMVRLLI MAVFYIGDEI GSEGSDPIGK  120
KKPGGLAQQK KGKWKSVSRA MMEKGFYVSP QQCEDKFNDL NKRYKRVNDI LGKGTACRVV  180
ENQNLLDTMD LSPKTKEELR KLLNSKHLFF REMCVYHNSC GHAPSWVAFG NNHSPEMATG  240
PSHAQHLQAA QQQHQRCSHS TENTQAVTNS RTETEGSKMA KRARNEEDAV EDDDYESNDD  300
EDHYEDDEDE AIKGDSRHQN GHGQGDEEDH HDEKSSRKRP RKDVFSTTSL MQQLNGEIMN  360
VLQDGAKSSW EKNHWMRLRL MQLEEQQVSY QCQAFELEKQ RLKWVKFSSK KEREMERVKL  420
ENERSRLENE RMVLIVRKKE LGLLDTQHQQ QQQLPSNKRN DTSSIAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409418KKEREMERVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0639s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012418.10.0PREDICTED: uncharacterized protein LOC105116670
TrEMBLA0A2K1XDC90.0A0A2K1XDC9_POPTR; Uncharacterized protein
STRINGXP_002528638.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-76sequence-specific DNA binding transcription factors