PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0650s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 321aa    MW: 36036 Da    PI: 9.6788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0650s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-13131176454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             + +++E+rRRdriN+ +  Lr+l+Pk+     +K++Ka+ L  A++++k+L
  SapurV1A.0650s0060.1.p 131 SQSQAEKRRRDRINEQLGILRKLIPKS-----EKMDKAALLGSAIDHVKDL 176
                             56789*********************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.053127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-13131184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14131179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-11131176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-13133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-9135179No hitNo description
Gene3DG3DSA:3.30.70.2603.1E-5221284No hitNo description
CDDcd048733.16E-7223259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAKHDFHLTI KVNETSRQSA SRYADHTLLV QIQYLYNEWR IKRRKTRSLD FTRKFPFFCL  60
DMEDHYSPCW PAAPSEANWV QTSDAVYDES FLVPCPSHAS ASANFQVNGF PSLSIPIQEA  120
SENRAASGSK SQSQAEKRRR DRINEQLGIL RKLIPKSEKM DKAALLGSAI DHVKDLKQKA  180
TEISKTFTIP TEVDEVTVDC DVSQATNPSS TNKDKDSTFI RASVCCDDRP ELFSELIRVL  240
KGLRLTIVRA DIASVGGRVK SILVLCNKCS KEGGVSISTI KQSLNLVLSR IASSSVPSNY  300
RIRSKRQRFF LPSHLSQQYT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0650s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311240.10.0transcription factor bHLH51 isoform X1
RefseqXP_024463294.10.0transcription factor bHLH51 isoform X1
RefseqXP_024463295.10.0transcription factor bHLH51 isoform X1
TrEMBLB9HHS90.0B9HHS9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-40bHLH family protein