PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0650s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 259aa    MW: 28365.7 Da    PI: 7.6469
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0650s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181156147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +g+W+++Ed  lv++v+q+G+++W+ I+  ++ gR++k+c++rw + 
  SapurV1A.0650s0070.1.p 11 KGSWSPQEDATLVRLVEQHGPRNWSMISTGIP-GRSGKSCRLRWCNQ 56
                            799*****************************.***********985 PP
2Myb_DNA-binding55.99.9e-1865107347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++T+ Ed ++v+a++ +G++ W+tIar ++ gRt++ +k++w++ 
  SapurV1A.0650s0070.1.p  65 PFTPAEDAKIVQAHAIHGNK-WATIARLLP-GRTDNTIKNHWNST 107
                             89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.969657IPR017930Myb domain
SuperFamilySSF466892.02E-309104IPR009057Homeodomain-like
SMARTSM007172.8E-151059IPR001005SANT/Myb domain
PfamPF002492.5E-171156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-241264IPR009057Homeodomain-like
CDDcd001673.18E-141355No hitNo description
PROSITE profilePS5129425.43958112IPR017930Myb domain
SMARTSM007171.9E-1462110IPR001005SANT/Myb domain
PfamPF002497.8E-1565107IPR001005SANT/Myb domain
CDDcd001671.10E-1165108No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2365111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGSVDGGDRI KGSWSPQEDA TLVRLVEQHG PRNWSMISTG IPGRSGKSCR LRWCNQLSPE  60
VQHRPFTPAE DAKIVQAHAI HGNKWATIAR LLPGRTDNTI KNHWNSTLRR KRASVSSTSS  120
ESNSVHKRST LEVSVDSDQS ESDSGSKRQC LHASPGHHSV DGDVGLDGPE TSLTLSLPGD  180
GFVSTSVAEK LKEGVAVDGR EKDLGESIMK DSEKRWTEEM DEACVRTLIQ KIIQEEVRVY  240
FDRLKTRDGV TIGSLKGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-37101113104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0650s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000247.11e-155PREDICTED: transcription factor MYB44-like
TrEMBLB9HHT01e-151B9HHT0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07100.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-54myb domain protein 77