PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0650s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 323aa    MW: 34940.2 Da    PI: 9.0891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0650s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18e-1765110251
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                             +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a  
  SapurV1A.0650s0090.1.p  65 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFSTAEDAARAYDRATI 110
                             59****999.**********954...5999****************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-3665128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2965123IPR001471AP2/ERF domain
PfamPF008471.0E-1065108IPR001471AP2/ERF domain
PROSITE profilePS5103222.12865122IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2065123IPR016177DNA-binding domain
CDDcd000185.19E-3165123No hitNo description
PRINTSPR003672.0E-106677IPR001471AP2/ERF domain
PRINTSPR003672.0E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDKSSHPPQE PAAATISSND KSIDKNTTAT TPTTTTTSDT NSNNKNSGSR RKCKGKGGPD  60
NGKFRYRGVR QRSWGKWVAE IREPRKRTRR WLGTFSTAED AARAYDRATI ILYGSRAQLN  120
LQHSGSSSSA QSGSTSLNSA SSSSQTLRPL LPRPPGSVFA FSLSNSMVSA ASSGLTPPRV  180
SYHSNNVAGS AIPCPSTNDM LIQSHQQVML QRYFNQYGAN TSNPINIFDS SSVATSTTPS  240
YQNHSYRQPQ HHACDDASSL LGSVCSSFFL SGGSSQVPIA APEGYLHDQV RNVGFGSPSV  300
WHDDEYPLPS IWDDEDPFLF DF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1766121359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0650s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514530.0EF151453.1 Populus trichocarpa abscisic acid insensitive 4-2 (ABI4-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312168.31e-141ethylene-responsive transcription factor ABI4
TrEMBLA0A2K1ZD801e-139A0A2K1ZD80_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07120.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-28ERF family protein