PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0655s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 503aa    MW: 57449.4 Da    PI: 5.3067
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0655s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.53.1e-2742125186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW+kqe+ aL+++r++m+ ++r++  k+plWe+vs+k+ e g++rs+k+Ckek+en+ k+++++k g+++r  ++ +t+++f+ql+
  SapurV1A.0655s0060.1.p  42 RWPKQETIALLKIRSDMDFAFRDSVVKAPLWEKVSRKLNELGYNRSAKKCKEKFENIYKYHRRTKGGQSGR--PNGKTYRFFEQLQ 125
                             8********************************************************************97..55568******98 PP
2trihelix102.82.5e-32339424187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k+e+  Li++r+++e + +++  k+plWee+s  m+  g+ rs+k+Ckekwen+nk++k++ke++kkr +++s+tcpyf+ql+a
  SapurV1A.0655s0060.1.p 339 RWPKEEIESLIKIRTYLEFQCQENGPKGPLWEEISTSMKNLGYDRSAKRCKEKWENMNKYFKRVKESNKKR-PGDSKTCPYFQQLDA 424
                             8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.7E-439101IPR001005SANT/Myb domain
CDDcd122034.80E-2241106No hitNo description
PROSITE profilePS500907.0734199IPR017877Myb-like domain
PfamPF138376.5E-1841127No hitNo description
PROSITE profilePS500907.631332396IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-4335396IPR009057Homeodomain-like
SMARTSM007170.075336398IPR001005SANT/Myb domain
PfamPF138375.7E-23338425No hitNo description
CDDcd122031.86E-25338403No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
METSTTLPEN SSAAAGDWED EDGDEDMRVQ AEEGVQCSTG NRWPKQETIA LLKIRSDMDF  60
AFRDSVVKAP LWEKVSRKLN ELGYNRSAKK CKEKFENIYK YHRRTKGGQS GRPNGKTYRF  120
FEQLQALDKT NALVSPASSD RAHCLMPSAS VNPVSFIPNI APCSIQSPST NCTDATSTST  180
ASTSSEESDG TRKKKQKLAD FFERLMKEVV EKQENLQNKF LEAIEKCEQE RITREEAWKM  240
QELDRIKREH ELLVHERAIS AAKDAAVLAF LQKFSEQGIP VQLPDNPTVP MKFPDNQTVP  300
VQFSVSARLP KDQAVPVENA EKTHENNSLE SFVNMNSSRW PKEEIESLIK IRTYLEFQCQ  360
ENGPKGPLWE EISTSMKNLG YDRSAKRCKE KWENMNKYFK RVKESNKKRP GDSKTCPYFQ  420
QLDALYREKT RRVDNPGYEL KPEELLMHMM GGQGDQQLPD SATTEDRESE NVDQIQEDYR  480
GKEDGDGYRI VAIDPSSMEI ME*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0655s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2113060.0AC211306.1 Populus trichocarpa clone POP004-K18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024447625.10.0trihelix transcription factor GT-2
SwissprotQ391171e-122TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K1WMS90.0A0A2K1WMS9_POPTR; Uncharacterized protein
STRINGPOPTR_0019s02650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-123Trihelix family protein