PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0657s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 709aa    MW: 78209.2 Da    PI: 7.2558
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0657s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.8e-24152253199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD +
  SapurV1A.0657s0050.1.p 152 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDAI 236
                             89****************************986555555..8999****************************************** PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF   + +++ l+v+++r+
  SapurV1A.0657s0050.1.p 237 VFL--RAENGDLCVGIRRA 253
                             ***..4488999****997 PP
2Auxin_resp112.25.1e-37305388183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             aa+ a+++++FevvY+Pr st+eF+v+++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +d++rWpnS+Wr+L+
  SapurV1A.0657s0050.1.p 305 AASLAASGQTFEVVYYPRGSTPEFCVRASAVRTAMHIQWCPGMRFKMAFETEDSSRISWfMGTISSVQFADTIRWPNSPWRLLQ 388
                             688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-37144256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-30145255IPR015300DNA-binding pseudobarrel domain
CDDcd100178.92E-22151252No hitNo description
SMARTSM010193.2E-22152254IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253152254IPR003340B3 DNA binding domain
PfamPF023627.5E-22152253IPR003340B3 DNA binding domain
PfamPF065073.6E-32305388IPR010525Auxin response factor
PROSITE profilePS5174518.907622702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MFEAKLRDGY TQVLQIPKLH SGPMIREFAV MNPHKEQMRV AEKCLDSQLW HACAGSMVQM  60
PAVNSKVFYF PQGHAEHAQG SVDFGNFQIP ALIPCKVSAI KYMADPETDE VYAKIKLTPS  120
SNSDLMFGDG CDEDSDERLP NGTESQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR  180
LDYTAEPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSSFVNQKKL VAGDAIVFLR  240
AENGDLCVGI RRAKRGIGGG NECSSGWSSF GGYSGFLRED ESKLMRRNGN GDMKGKVKPE  300
SVIEAASLAA SGQTFEVVYY PRGSTPEFCV RASAVRTAMH IQWCPGMRFK MAFETEDSSR  360
ISWFMGTISS VQFADTIRWP NSPWRLLQVA WDEPDLLQNV KRVSPWLAEL VSNMPAIHLS  420
PFSPPRKKLR LPQPPDFPLF GQISMPSFNG IPLRSNSPLC CVSDNIPAGI QGARHAQFGL  480
SSSDLHFNKL QSGLFPVDFQ RRDHAASPSR VSSSNFMGNT EKTESISCLL TMGNSSQSLK  540
ESSETKTPHI LLFGQLIVTD QRSSQSCSGV TNTNSLSDGN PGKASSDGSG SALQPNGRME  600
NSSDERSTWY KHHQKTGLCL ETDHCKVFME SEDIGRTLDL SVLGSYEELH RKLASMFGIE  660
SSEMPSNVLY RDAVGATRHT GDEPFSEFLK TARRLTILSD ASSDNLGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-774040914353Auxin response factor 1
4ldw_A3e-774040914353Auxin response factor 1
4ldw_B3e-774040914353Auxin response factor 1
4ldx_A4e-774040914353Auxin response factor 1
4ldx_B4e-774040914353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0657s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311089.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9HLK70.0B9HLK7_POPTR; Auxin response factor
STRINGPOPTR_0008s03890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]