PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0664s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 558aa    MW: 61836.3 Da    PI: 5.6547
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0664s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.43.3e-1182135551345
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL++cA+a+++++ +  ++l+++ +  +s +g+p+qRl ay+ e+L ar  +s+ ++y+al+++e +    ++ l+++++++e+
  SapurV1A.0664s0120.1.p 213 LKQLLIACAKALAENNVNGFDKLIEKARSVVSISGEPIQRLGAYLIEGLVARKESSGANIYRALRCREPE---GKDLLSYMHILYEI 296
                             689******************************************************************9...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+lkf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le+++ rL+ + +++
  SapurV1A.0664s0120.1.p 297 CPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEAVAGRLSAISDKF 383
                             ***************************************************************999999****************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             ++p+ef+  v     d++ e+L+v+pgEalaVn+ lqlh+++desv+++++r+ +L+++ks +Pkvv++veqe+++n+++F++rf+e
  SapurV1A.0664s0120.1.p 384 NIPVEFHG-VPVFAPDVTKETLDVRPGEALAVNFPLQLHHTPDESVDVNNPREGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVE 469
                             ********.6888999*********************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                             +l+yy a+f+s++++lpr+ +eri+vE+++l+r+ vnv+aceg+er+erhe ++kW++r+++aGF+++pls+++++ +++llr+++
  SapurV1A.0664s0120.1.p 470 TLNYYLAMFESIDVTLPRDRKERISVEQHCLARDMVNVIACEGKERVERHELFRKWKSRFMMAGFEQYPLSSYVNSVIRSLLRTYS 555
                             ***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.711187557IPR005202Transcription factor GRAS
PfamPF035141.2E-115213555IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MESRQYFGYG VTGSGLSYSS SYPSAPSIPD RLFGSLKFDL GNSPSSPFSS QFDCDSYAAT  60
LSDSQECYSS TDNLSTVSPS RNSSIESNSY FNRPSPSVDC RLESLQIFSG SSSSLQDASS  120
SQNIKHALQE LETALMGPDD DEDLSTSNTS PGESGRPQPS DQKPRTWIQG SHAIQNETSF  180
VSRQRQLGEG DHVEKRRKSM EEVSVHGIPP GDLKQLLIAC AKALAENNVN GFDKLIEKAR  240
SVVSISGEPI QRLGAYLIEG LVARKESSGA NIYRALRCRE PEGKDLLSYM HILYEICPYL  300
KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWMTLLQA LAARPGGAPH VRITGIDDPV  360
SKYARGDGLE AVAGRLSAIS DKFNIPVEFH GVPVFAPDVT KETLDVRPGE ALAVNFPLQL  420
HHTPDESVDV NNPREGLLRM IKSFNPKVVT LVEQESNTNT TPFVTRFVET LNYYLAMFES  480
IDVTLPRDRK ERISVEQHCL ARDMVNVIAC EGKERVERHE LFRKWKSRFM MAGFEQYPLS  540
SYVNSVIRSL LRTYSEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-532155546343GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0664s0120.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016013.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_011048259.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1X9QM810.0A0A1X9QM81_9ROSI; Phytochrome A signal transduction 1
STRINGPOPTR_0001s44090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-168GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]