PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0685s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 179aa    MW: 20346.4 Da    PI: 9.5165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0685s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-092474355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                            +  +++E++RR+++++ +++L +llP+ +    ++  +  +   +A++YIk L+
  SapurV1A.0685s0010.2.p 24 TERKIVEKNRRNQMKTLYSNLNSLLPNrN---FKEAQTLPDQIDEAINYIKRLE 74
                            66789**********************55...77779999***********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.5062173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-102191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-92392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-52474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00132779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVAKTRGPTM ESSSSRSKIS STKTERKIVE KNRRNQMKTL YSNLNSLLPN RNFKEAQTLP  60
DQIDEAINYI KRLEEKLEKS REKRESLKRS RNRTHACTFD PIPPIATSKS PQLKIQEMGS  120
ALEIVLTCGL DNQFVFYEII KILHEEGVEV VSANFQALGD SIFHIVHAQV ILIFDPLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489ESLKRS
28792KRSRNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0685s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002885.19e-90PREDICTED: transcription factor bHLH118-like isoform X4
TrEMBLU5FEU04e-85U5FEU0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13090.13e-85(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-25bHLH family protein