PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0690s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 258aa    MW: 28048.3 Da    PI: 7.8229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0690s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13193238655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri +++ +L++l+P+     +k  + a++Le+Av+Y+k Lq
  SapurV1A.0690s0120.1.p 193 SIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLEEAVDYVKFLQ 238
                             689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-17190253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-13191242No hitNo description
Gene3DG3DSA:4.10.280.102.8E-17192252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10193238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-14193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MQPSPGGGRN TSGGGGGGGG GGGLARFRSA PATWLAALLE EEEEDPLKQN QNLTQLLTSN  60
APSSRNPVPF NDSSAAVEPG LFEKGGGFQR QNSPPDDFTG NSGIGSDQGC FSNYGFASNY  120
EYMQPNMEVS PSGKRARELD QLQNPSARYP PPSKGALTGS LRASTLMEMD TFLEESVPCR  180
IRAKRGCATH PRSIAERVRR TRISDRIRKL QDLVPNMDKQ TNTADMLEEA VDYVKFLQKQ  240
IQELTEQQRK CKCMARE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614GGRNTSGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0690s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325537.31e-138transcription factor bHLH81
SwissprotQ9C8P89e-81BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2K1WRC81e-136A0A2K1WRC8_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10900.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-66bHLH family protein