PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0691s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 411aa    MW: 45455.7 Da    PI: 6.2992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0691s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31218276259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+++++ Y+g+H+h+
  SapurV1A.0691s0140.1.p 218 NDVWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDPNMFIVSYTGDHTHP 276
                             8**************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-31205278IPR003657WRKY domain
PROSITE profilePS5081133.534212278IPR003657WRKY domain
SuperFamilySSF1182909.55E-27212278IPR003657WRKY domain
SMARTSM007743.7E-37217277IPR003657WRKY domain
PfamPF031065.5E-26218276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAEGQDWDLY AIVRSCTSAA ANSNSSGITC ENFENPFESL ASLTFDDDDD QEFNPFSFPN  60
LAVQPTNNSS LQELQDSYKP FLPSYCASGL QGDHHNDNIP ASSSVSDFGV IFSGQNPPQL  120
AHQQRQQNHD HHHHHRQQQP PPPPSTSVSI SPRFRSRQQQ PQHVLQQQQN QRRQLHQLGT  180
SASSIFPLTP QSQTPRSRKK KNNQKRLVLH VAAENLSNDV WAWRKYGQKP IKGSPYPRNY  240
YRCSSSKGCA ARKQVERSNT DPNMFIVSYT GDHTHPRPTH RNSLAGSTRN KVQQAVPKPE  300
EKESEQPSIS ADKGLCSSPL SATSLSPRTP LSAPIDRVET AVNDQEIKIE NLKGGHGLMG  360
SDDDDDCNND INDDYDDDLL IPNMALNEDF IMGFQELVSA SEGGGGGSSK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-192192791880Disease resistance protein RRS1
5w3x_D1e-192192791880Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0691s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046055.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLB9MX640.0B9MX64_POPTR; Uncharacterized protein
STRINGPOPTR_0017s00960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-57WRKY DNA-binding protein 27