PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0697s0070.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 469aa    MW: 50700.8 Da    PI: 9.0065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0697s0070.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05628123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C+k F r  nL+ H r H
  SapurV1A.0697s0070.2.p  6 FVCEICKKGFQRDQNLQLHRRGH 28
                            89*******************88 PP
2zf-C2H214.50.000182104123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k++  +s+ k H +t+
  SapurV1A.0697s0070.2.p  82 WKCGKCSKRYAVQSDWKAHAKTC 104
                             58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.47E-6528No hitNo description
PROSITE profilePS5015710.637628IPR007087Zinc finger, C2H2
SMARTSM003550.039628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551404777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.47E-677102No hitNo description
SMARTSM0035522082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MATNRFVCEI CKKGFQRDQN LQLHRRGHNL PWKLKQRTSN EIRKKVYVCP EPNCVHHDPS  60
RALGDLTGIK KHFCRKHGEK KWKCGKCSKR YAVQSDWKAH AKTCGTREYR CECGTLFSRR  120
DSFVTHRAFC DALAEEKARS MAGATTSQFL STQPAGSSNP HVVNLQMPQF SGQNLHVFSL  180
KKEQQSCFRF RPDFPPWLAC PPGLGAPGPP HYQSPIDHLS SSSSPSILST RLGQEFTPTC  240
QDMSPNPNPS PGPTLPQYHS GPSPHMSATA LLQKAAQMGA TVSSKPTGLM RPHYHQQQQE  300
QAHVSANADN VSNTNTAGFG LNLSSREELA SGGLFLSGSA PFGNKAGPPV VPSGAARSTG  360
AVPPSGSLLT DMMDSLSSAS GFEDPSFEDA LGSSGVLNST KDVNSSYSTS RTARNDHGSG  420
SNGGNEGLTI DFLGSRPLSH SDIIMSMVGL SNCINSSHEQ QTHKPWQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-3478139364Zinc finger protein JACKDAW
5b3h_F6e-3478139364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13244KLKQRTSNEIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0697s0070.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2129270.0AC212927.1 Populus trichocarpa clone POP017-N15, complete sequence.
GenBankAC2164670.0AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000809.10.0PREDICTED: zinc finger protein NUTCRACKER
RefseqXP_011000810.10.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9SCQ64e-95IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2K2B1300.0A0A2K2B130_POPTR; Uncharacterized protein
STRINGPOPTR_0003s04470.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-93C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]