PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0708s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 244aa    MW: 26774.3 Da    PI: 8.6979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0708s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding642.8e-20752147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +g+W++eEdell+++v ++G+++W+ Iar ++ gR++k+c++rw + 
  SapurV1A.0708s0130.1.p  7 KGPWSPEEDELLKHLVIKHGPRNWTMIARAVP-GRSGKSCRLRWCNQ 52
                            79******************************.***********985 PP
2Myb_DNA-binding53.74.6e-1761103347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +++ eEde+ ++a++++G++ W+tIar +  gRt++ +k++w++ 
  SapurV1A.0708s0130.1.p  61 AFSREEDEIVINAHARYGNK-WATIARLLD-GRTDNAIKNHWNST 103
                             699*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.605157IPR017930Myb domain
SuperFamilySSF466894.31E-315100IPR009057Homeodomain-like
SMARTSM007171.8E-17655IPR001005SANT/Myb domain
PfamPF002491.2E-18752IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-25860IPR009057Homeodomain-like
CDDcd001671.39E-16951No hitNo description
SMARTSM007175.4E-1458106IPR001005SANT/Myb domain
PROSITE profilePS5129420.65859108IPR017930Myb domain
PfamPF002497.0E-1461103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2261107IPR009057Homeodomain-like
CDDcd001671.71E-1161104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDNKRVKGPW SPEEDELLKH LVIKHGPRNW TMIARAVPGR SGKSCRLRWC NQLSPEVEHR  60
AFSREEDEIV INAHARYGNK WATIARLLDG RTDNAIKNHW NSTLKRKYAD LFENDGVVNE  120
DGVKEKSAKT GSSSSVHKRT ISPSGSDVSD AGLPVTSSML VRENVPAVET GMSNNDGVST  180
ELTLSTPGME SGQLGRDGVG AKELLTGDVE KTMTFAPELL AVMQEMIRKE VRNYMVGIGK  240
KSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-3961073104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-38610757158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-38610757158MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-3961073104C-Myb DNA-Binding Domain
1msf_C4e-3961073104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0708s0130.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313145.11e-163transcription factor MYB73
SwissprotO231603e-71MYB73_ARATH; Transcription factor MYB73
TrEMBLB9HS591e-162B9HS59_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09890.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-73myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]