PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0710s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 200aa    MW: 23068.2 Da    PI: 9.8741
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0710s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-191764148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+eEd++l+++++ +G+++W+++a++ g++R++k+c++rw ++l
  SapurV1A.0710s0030.1.p 17 RGAWTAEEDQKLAQVIEIHGPKRWRSVAAKAGLNRCGKSCRLRWMNHL 64
                            89********************************************97 PP
2Myb_DNA-binding521.6e-1670115148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0710s0030.1.p  70 RGNISDQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115
                             78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5661268IPR017930Myb domain
SMARTSM007171.2E-161666IPR001005SANT/Myb domain
SuperFamilySSF466891.91E-2916111IPR009057Homeodomain-like
PfamPF002491.4E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-251871IPR009057Homeodomain-like
CDDcd001676.96E-121964No hitNo description
PROSITE profilePS5129421.01269119IPR017930Myb domain
SMARTSM007172.2E-1569117IPR001005SANT/Myb domain
PfamPF002491.4E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2472120IPR009057Homeodomain-like
CDDcd001673.89E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MPMAPMRGRC NKKEANRGAW TAEEDQKLAQ VIEIHGPKRW RSVAAKAGLN RCGKSCRLRW  60
MNHLRPNIKR GNISDQEEDL IVRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKIK  120
QNEEPVRSSR WKEPGTVKTK VQDMDSVAKR SEEGTSKTLE DSKYSFGGDG FFDFSNEDPM  180
NLEWMSKFLE LDETLYDFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-31141191105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0710s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308525.11e-135transcription factor MYB114
SwissprotP102903e-51MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLB9HD121e-134B9HD12_POPTR; MYB family protein
STRINGPOPTR_0006s23780.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.16e-53myb domain protein 66
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]