PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0710s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 635aa    MW: 72342.2 Da    PI: 6.6635
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0710s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.74.3e-30418502186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW+k ev aLi++r+++e ++++  lk+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k +e+ k++ s +s+tc+yf+ql+
  SapurV1A.0710s0040.1.p 418 RWPKYEVEALIQVRSRIEIKFQEPGLKGPLWEEVSSLMSSMGYQRSAKRCKEKWENINKYFRKARESPKRG-SARSKTCSYFNQLD 502
                             8*********************************************************************9.77888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.969411475IPR017877Myb-like domain
CDDcd122031.35E-24417482No hitNo description
PfamPF138372.3E-20417504No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MQPGYGLSNT DHHRQQQHRQ QHLMEDDFSC SPSVLPIPNF QNLNYPYQPH LHQQQQQHKH  60
PHQVLLQQHH QLFQLQQQRQ SQVQVAPQNP SLFSVNFKWG RNYEGSGNKK AGALNNQEEA  120
ACTTTNTATF HDGNVHFNPP HAIFMPHSWH PQEDSTTIKE PFWKQLNKQR NGSEEQEVNE  180
SKSNYFRPLE MDQVVDESSE GCKNLESKCP LFNELEAIYS LAQIAEANQT GSGSVLTCDN  240
SPTNAGLSMP FSVSNGQNVG AYGAANNVTG VDRGSENSIG EEASLRRCRK RKRKGKLKEK  300
LNYMAGFFEN SVKKVMNHQE ILHRKFLEVI ERMDKERAER EATWRCQEAE KYSREAISIA  360
HERASASRRE AQIVSYIEKI TGQSIDLLSR MAPPLLQPEI SNEPVKEITP TKTDSHSRWP  420
KYEVEALIQV RSRIEIKFQE PGLKGPLWEE VSSLMSSMGY QRSAKRCKEK WENINKYFRK  480
ARESPKRGSA RSKTCSYFNQ LDQLYSGTLI NYPPNTTYMP SSDIELGIKK QGYTELCEAF  540
SVRRDHLANV TTPVGVSVKS SEMGSSRFEF DGLSDQNTEL EEDSSEQDIG VYKDDKQKDD  600
EQLNDGGDEE IENRGEGRDG VSKHGASINP ELRW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285291RRCRKRK
2285293RRCRKRKRK
3288293RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0710s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308526.20.0trihelix transcription factor GTL1
TrEMBLB9HD130.0B9HD13_POPTR; Uncharacterized protein
STRINGPOPTR_0006s23800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-41Trihelix family protein