PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0711s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 209aa    MW: 22513.5 Da    PI: 4.9504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0711s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17120168254
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                             +y+GVr+++ +g+W+AeI+dp     + +r +lg+f  ae+Aa+a++    +++
  SapurV1A.0711s0020.1.p 120 KYRGVRQRP-WGKWAAEIWDPA----QgTRMWLGTFENAEDAARAYDMKNIEFR 168
                             8********.**********83....25*******************8776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-22120179IPR016177DNA-binding domain
SMARTSM003806.3E-36120183IPR001471AP2/ERF domain
PfamPF008471.2E-10120168IPR001471AP2/ERF domain
PROSITE profilePS5103223.709120177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-29120178IPR001471AP2/ERF domain
CDDcd000181.42E-30121179No hitNo description
PRINTSPR003672.7E-11121132IPR001471AP2/ERF domain
PRINTSPR003672.7E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEASSSSNLV QRLEQEHNAI VSALKHVISG GTDHGSTSGP IEYQDQQNIL AAAAADDDGN  60
AGERSNVIYV SDSETCLVCK LSTSQCLGCV YFSGGANDQG GGGNEDTREK KGKGKRRKNK  120
YRGVRQRPWG KWAAEIWDPA QGTRMWLGTF ENAEDAARAY DMKNIEFRGI RAITNFPLSD  180
YQVQETEQDN PNQTGEASSA GGETSGGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-22121178664ATERF1
3gcc_A8e-22121178664ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0711s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043562.11e-102PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLB9HHG66e-97B9HHG6_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11080.11e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-21ERF family protein