PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0721s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 420aa    MW: 46266.4 Da    PI: 6.6289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0721s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10251298455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  SapurV1A.0721s0010.1.p 251 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 298
                             8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-17245316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-10245302No hitNo description
PROSITE profilePS5088815.618247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17247314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7251298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MIYRALLSAG GENMLHCTDV TVLDRQRARI KWQQEQQQKE EVQLPQQEIS YFSDFSGVFQ  60
QAEFHEGGLS EVVTRSVKPD PGLVDNGWHN DHVVGFGVGP PYTNGLGFEL SYGAISRTSS  120
CPPAVAAAAA AATATATRRG AESVVSDKNS YGVGRESSKK RKFDKVQNNS KVIAEEDTRD  180
KRIKGCAEEG ESNTSEKNRN KSSSSNNNSN KNNNSNKDYS AEISKDNSKV TEVQKPDYIH  240
VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI INYVQSLQRQ  300
VEFLSMKLAA VNPRLDFNID NLFSKEVFNA CSTNFPSNGI STPDMTNAAY LQLNPAQQQL  360
VTCCGLDMGI NPPDMGLRRA ASTPVSIPET FLDSSSFTQI QPPPTWDADL QNLHNVAFD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0721s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1466665e-67EF146666.1 Populus trichocarpa clone WS01211_J16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037512.10.0PREDICTED: transcription factor bHLH63 isoform X1
TrEMBLA0A2K2AV700.0A0A2K2AV70_POPTR; BHLH family protein
STRINGPOPTR_0004s16330.10.0(Populus trichocarpa)
STRINGPOPTR_0009s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-62cryptochrome-interacting basic-helix-loop-helix 1