PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0752s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 306aa    MW: 32536.6 Da    PI: 9.8569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0752s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07108133227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             k +lC+ +     Ck+Gd+C+FaHg+
  SapurV1A.0752s0120.1.p 108 KSRLCNKYNTVEGCKFGDKCHFAHGE 133
                             6789999999999***********96 PP
2zf-CCCH35.71.5e-11272296126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +kt++C +f++ G C +GdrC+FaHg
  SapurV1A.0752s0120.1.p 272 FKTKICENFSK-GSCTFGDRCHFAHG 296
                             69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.683865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3433866IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-63965IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-74064IPR000571Zinc finger, CCCH-type
PfamPF146081.84663No hitNo description
Gene3DG3DSA:4.10.1000.104.6E-13103136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-7105136IPR000571Zinc finger, CCCH-type
SMARTSM003560.0056106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281106134IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5108133IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-14170250IPR004088K Homology domain, type 1
SMARTSM003229.9E-12178248IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.7E-16178250IPR004088K Homology domain, type 1
PROSITE profilePS5008414.236179243IPR004088K Homology domain, type 1
PfamPF000137.7E-11181244IPR004088K Homology domain, type 1
CDDcd001054.39E-13181243No hitNo description
Gene3DG3DSA:4.10.1000.103.9E-16269302IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7271297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-8271301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.821271298IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9272296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEFGGGQRKR TRHEAAFNGN GGHKKNRQEM ESISTGIGSK SKPCTKFFST SGCPFGEGCH  60
FLHHVPGGFK AVSQMLNVGG SPALPPASRN QGVPTLSYQD RSSPPSVKSR LCNKYNTVEG  120
CKFGDKCHFA HGEWELGKAS AAPPSYEDPR AMGPIPGRMI RHMDHPHQGH GAAASFGSSA  180
TTKISIDASL AGAIIGKNGV NSKHICRATG AKLSIRDHEA DPKKRSIELE GSFDQISQAS  240
DMVRQLISNV GQASGPPIKN QAMHSSGGSN NFKTKICENF SKGSCTFGDR CHFAHGAEEL  300
RKSGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0752s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2395830.0FJ239583.1 Populus balsamifera isolate FBK hypothetical protein gene, partial cds.
GenBankFJ2395840.0FJ239584.1 Populus balsamifera isolate FBK hypothetical protein gene, partial cds.
GenBankFJ2395850.0FJ239585.1 Populus balsamifera isolate FRE hypothetical protein gene, partial cds.
GenBankFJ2395890.0FJ239589.1 Populus balsamifera isolate GIL hypothetical protein gene, partial cds.
GenBankFJ2395900.0FJ239590.1 Populus balsamifera isolate GIL hypothetical protein gene, partial cds.
GenBankFJ2395930.0FJ239593.1 Populus balsamifera isolate HAY hypothetical protein gene, partial cds.
GenBankFJ2396010.0FJ239601.1 Populus balsamifera isolate MGR hypothetical protein gene, partial cds.
GenBankFJ2396130.0FJ239613.1 Populus balsamifera isolate WHR hypothetical protein gene, partial cds.
GenBankFJ2396170.0FJ239617.1 Populus balsamifera isolate Edm02 hypothetical protein gene, partial cds.
GenBankFJ2396290.0FJ239629.1 Populus balsamifera isolate Edm08 hypothetical protein gene, partial cds.
GenBankFJ2396490.0FJ239649.1 Populus balsamifera isolate Gal04 hypothetical protein gene, partial cds.
GenBankFJ2396510.0FJ239651.1 Populus balsamifera isolate Gal05 hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299153.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-110C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9GLM30.0B9GLM3_POPTR; C3H family protein
STRINGcassava4.1_012715m1e-175(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-52C3H family protein