PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0752s0120.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 232aa    MW: 24556.6 Da    PI: 9.3555
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0752s0120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.8e-083459227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                            k +lC+ +     Ck+Gd+C+FaHg+
  SapurV1A.0752s0120.2.p 34 KSRLCNKYNTVEGCKFGDKCHFAHGE 59
                            6789999999999***********96 PP
2zf-CCCH36.21e-11198222126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +kt++C +f++ G C +GdrC+FaHg
  SapurV1A.0752s0120.2.p 198 FKTKICENFSK-GSCTFGDRCHFAHG 222
                             69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-132962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-83162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2813260IPR000571Zinc finger, CCCH-type
SMARTSM003560.00563259IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-53459IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.26E-1495176IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.5E-16104176IPR004088K Homology domain, type 1
SMARTSM003229.9E-12104174IPR004087K Homology domain
PROSITE profilePS5008414.236105169IPR004088K Homology domain, type 1
PfamPF000134.7E-11107170IPR004088K Homology domain, type 1
CDDcd001051.27E-13107169No hitNo description
Gene3DG3DSA:4.10.1000.102.6E-16195228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.821197224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-9197227IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7197223IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9198222IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLNVGGSPAL PPASRNQGVP TLSYQDRSSP PSVKSRLCNK YNTVEGCKFG DKCHFAHGEW  60
ELGKASAAPP SYEDPRAMGP IPGRMIRHMD HPHQGHGAAA SFGSSATTKI SIDASLAGAI  120
IGKNGVNSKH ICRATGAKLS IRDHEADPKK RSIELEGSFD QISQASDMVR QLISNVGQAS  180
GPPIKNQAMH SSGGSNNFKT KICENFSKGS CTFGDRCHFA HGAEELRKSG M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0752s0120.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2395830.0FJ239583.1 Populus balsamifera isolate FBK hypothetical protein gene, partial cds.
GenBankFJ2395840.0FJ239584.1 Populus balsamifera isolate FBK hypothetical protein gene, partial cds.
GenBankFJ2395850.0FJ239585.1 Populus balsamifera isolate FRE hypothetical protein gene, partial cds.
GenBankFJ2395890.0FJ239589.1 Populus balsamifera isolate GIL hypothetical protein gene, partial cds.
GenBankFJ2395900.0FJ239590.1 Populus balsamifera isolate GIL hypothetical protein gene, partial cds.
GenBankFJ2395930.0FJ239593.1 Populus balsamifera isolate HAY hypothetical protein gene, partial cds.
GenBankFJ2396010.0FJ239601.1 Populus balsamifera isolate MGR hypothetical protein gene, partial cds.
GenBankFJ2396130.0FJ239613.1 Populus balsamifera isolate WHR hypothetical protein gene, partial cds.
GenBankFJ2396170.0FJ239617.1 Populus balsamifera isolate Edm02 hypothetical protein gene, partial cds.
GenBankFJ2396290.0FJ239629.1 Populus balsamifera isolate Edm08 hypothetical protein gene, partial cds.
GenBankFJ2396490.0FJ239649.1 Populus balsamifera isolate Gal04 hypothetical protein gene, partial cds.
GenBankFJ2396510.0FJ239651.1 Populus balsamifera isolate Gal05 hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299153.11e-165zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R08e-76C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2K2BQR41e-165A0A2K2BQR4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s05070.11e-166(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-54C3H family protein