PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0755s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 257aa    MW: 29023.2 Da    PI: 5.2728
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0755s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.6e-2058109556
                             SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             ++f++eq++ Le++Fe++ ++  +++++LA++lgL+ rqV +WFqNrRa++k
  SapurV1A.0755s0130.1.p  58 RRFSDEQVRSLESVFESETKLEPRKKTQLARELGLEPRQVAIWFQNRRARWK 109
                             58*************************************************9 PP
2HD-ZIP_I/II120.31e-3857145391
             HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                              rr+s+eqv++LE+ Fe+e+kLep++K++lareLgl+prqva+WFqnrRAR+ktkq+E++y++Lk++yd l+++ e+L++e e+L  
  SapurV1A.0755s0130.1.p  57 TRRFSDEQVRSLESVFESETKLEPRKKTQLARELGLEPRQVAIWFQNRRARWKTKQMEQKYKTLKASYDDLASSYESLKNERESLLL 143
                             69*********************************************************************************9986 PP

             HD-ZIP_I/II  90 el 91 
                             + 
  SapurV1A.0755s0130.1.p 144 QF 145
                             65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1850113IPR009057Homeodomain-like
PROSITE profilePS5007117.52451111IPR001356Homeobox domain
SMARTSM003891.1E-1754115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-2058118IPR009057Homeodomain-like
PfamPF000462.0E-1758109IPR001356Homeobox domain
CDDcd000861.93E-1658112No hitNo description
PRINTSPR000314.8E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000314.8E-691107IPR000047Helix-turn-helix motif
PfamPF021831.6E-11111152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSHQKLMGGV VDFDQVIIAG DQTEAAERLA CFDDGDQQQL EKVSRRKKKK KGGKMNTRRF  60
SDEQVRSLES VFESETKLEP RKKTQLAREL GLEPRQVAIW FQNRRARWKT KQMEQKYKTL  120
KASYDDLASS YESLKNERES LLLQFQTVSD QLGNPCEASE RCDRGIDEVL HDGITNLEAA  180
APQGLDNNRT IMASVCDDLS MENGQSSDKG QGFLYTGSPE YNDGTLASAY EKSYSSGSGA  240
QFDLSWSSSY WFNFRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450RRKKKKK
2103111RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0755s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091841e-139AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317813.21e-143homeobox-leucine zipper protein ATHB-12
TrEMBLA0A2K1Y7S81e-142A0A2K1Y7S8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03080.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-42homeobox 7