PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0761s0070.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 346aa    MW: 38806 Da    PI: 8.325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0761s0070.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.5e-112351448
                            HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            ++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
  SapurV1A.0761s0070.2.p  2 ELVGKHGCRKWSVIAKSLP-GRVGKQCRERWFNHL 35
                            7899***************.*************97 PP
2Myb_DNA-binding49.31.1e-154184146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            r +WT+eE+  l  +++ +G++ W++Iar ++ gR+++ +k++w+ 
  SapurV1A.0761s0070.2.p 41 RAPWTEEEEMTLTYYHEIYGNK-WAKIARFLP-GRSDNAIKNFWNC 84
                            569*******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.255135IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-20141IPR009057Homeodomain-like
PfamPF002491.4E-9235IPR001005SANT/Myb domain
CDDcd001677.12E-8235No hitNo description
SMARTSM007173.2237IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-271493IPR009057Homeodomain-like
PROSITE profilePS5129421.7593690IPR017930Myb domain
SMARTSM007171.4E-164088IPR001005SANT/Myb domain
PfamPF002492.4E-134183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-224290IPR009057Homeodomain-like
CDDcd001671.28E-124386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MELVGKHGCR KWSVIAKSLP GRVGKQCRER WFNHLDPTIN RAPWTEEEEM TLTYYHEIYG  60
NKWAKIARFL PGRSDNAIKN FWNCVLKKNL DSNSLHGWTM DLFTVSSLNS YNCDTELNCL  120
KLKERQSVEK AAFVNENIEL RCSAETSASR SGKAKGTGKK NEVHKLHIQA EETSQNCLHR  180
ESQQQSTLVS NLDADEVPSM DACAMHPISP ICCSTPTKYT RSISVNNTSP ESLLRNSART  240
FKNTPSIIRK RALRGAAIAK TSDVTCTPSL KFSCANDCQI VDSTNSPVEK QGFLPSFEPE  300
TSLVIKSLKR HLDYAFDMEK EADPGKCGKS VPLSEPLHLN FLESW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-3419219110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0761s0070.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033774.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033775.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033776.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033777.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033778.10.0PREDICTED: myb-related protein A-like
TrEMBLA0A3N7G6W90.0A0A3N7G6W9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12390.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.16e-40myb domain protein 3r-3