PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0761s0070.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 326aa    MW: 36664.5 Da    PI: 7.9789
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0761s0070.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-152164146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            r +WT+eE+  l  +++ +G++ W++Iar ++ gR+++ +k++w+ 
  SapurV1A.0761s0070.3.p 21 RAPWTEEEEMTLTYYHEIYGNK-WAKIARFLP-GRSDNAIKNFWNC 64
                            569*******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.93E-21573IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-6626IPR009057Homeodomain-like
PROSITE profilePS5129421.7591670IPR017930Myb domain
SMARTSM007171.4E-162068IPR001005SANT/Myb domain
PfamPF002492.2E-132163IPR001005SANT/Myb domain
CDDcd001677.62E-132366No hitNo description
Gene3DG3DSA:1.10.10.601.2E-182770IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVCYRKVLTR WFNHLDPTIN RAPWTEEEEM TLTYYHEIYG NKWAKIARFL PGRSDNAIKN  60
FWNCVLKKNL DSNSLHGWTM DLFTVSSLNS YNCDTELNCL KLKERQSVEK AAFVNENIEL  120
RCSAETSASR SGKAKGTGKK NEVHKLHIQA EETSQNCLHR ESQQQSTLVS NLDADEVPSM  180
DACAMHPISP ICCSTPTKYT RSISVNNTSP ESLLRNSART FKNTPSIIRK RALRGAAIAK  240
TSDVTCTPSL KFSCANDCQI VDSTNSPVEK QGFLPSFEPE TSLVIKSLKR HLDYAFDMEK  300
EADPGKCGKS VPLSEPLHLN FLESW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-18107248110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0761s0070.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033774.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033775.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033776.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033777.10.0PREDICTED: myb-related protein A-like
RefseqXP_011033778.10.0PREDICTED: myb-related protein A-like
TrEMBLA0A3N7G6W90.0A0A3N7G6W9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12390.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.23e-24Homeodomain-like protein