PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0768s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 256aa    MW: 29719.2 Da    PI: 4.7511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0768s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.38.3e-4241401128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk 79 
                             +ppGfrF Pt+eelv++yL++k+e+++      +++ i+ +diy++ Pw+Lp+     ++++++ew+fF++ ++ +a+g r++r t+
  SapurV1A.0768s0010.1.p   4 MPPGFRFYPTEEELVSFYLHNKLEARRedllRAMDRLIPVLDIYRFSPWELPRfsgdLCHGDTEEWFFFIRMQEGEARGGRPRRLTS 90 
                             79***********************997774444446999************546764455778*********************** PP

                     NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +gyWkatg+  +v+s+ +++ +g k+t+vfy+grap+g+kt+W m+e+++
  SapurV1A.0768s0010.1.p  91 NGYWKATGSPCPVYSSnSNRCIGEKRTMVFYEGRAPNGRKTEWKMNEFKA 140
                             ***************855666***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-443171IPR003441NAC domain
PROSITE profilePS5100546.6034172IPR003441NAC domain
PfamPF023656.8E-215139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDMMPPGFRF YPTEEELVSF YLHNKLEARR EDLLRAMDRL IPVLDIYRFS PWELPRFSGD  60
LCHGDTEEWF FFIRMQEGEA RGGRPRRLTS NGYWKATGSP CPVYSSNSNR CIGEKRTMVF  120
YEGRAPNGRK TEWKMNEFKA MEEVEEEEEA TLSNGGHTRL RQEFSLCRVY KNKFVRAFDR  180
RPIGVEMGEM RAQATPFNEV TSSHQNPSTV EIACSDDISS LGDHGQPFQT GEASNMASMD  240
IDNEPIWDWE QFDWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-29417317166NO APICAL MERISTEM PROTEIN
1ut4_B4e-29417317166NO APICAL MERISTEM PROTEIN
1ut7_A4e-29417317166NO APICAL MERISTEM PROTEIN
1ut7_B4e-29417317166NO APICAL MERISTEM PROTEIN
3swm_A4e-29417320169NAC domain-containing protein 19
3swm_B4e-29417320169NAC domain-containing protein 19
3swm_C4e-29417320169NAC domain-containing protein 19
3swm_D4e-29417320169NAC domain-containing protein 19
3swp_A4e-29417320169NAC domain-containing protein 19
3swp_B4e-29417320169NAC domain-containing protein 19
3swp_C4e-29417320169NAC domain-containing protein 19
3swp_D4e-29417320169NAC domain-containing protein 19
4dul_A4e-29417317166NAC domain-containing protein 19
4dul_B4e-29417317166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0768s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166721e-106AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004197.11e-155PREDICTED: NAC domain-containing protein 90-like
TrEMBLB9HBX61e-152B9HBX6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s22580.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-73NAC domain containing protein 90