PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0768s0010.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 182aa MW: 20646.8 Da PI: 4.8455

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0768s0010.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	62.6	1.2e-19	5	66	68	128
NAM 68 yatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +a+g r++r t++gyWkatg+ +v+s+ +++ +g k+t+vfy+grap+g+kt+W m+e+++ SapurV1A.0768s0010.2.p 5 EARGGRPRRLTSNGYWKATGSPCPVYSSnSNRCIGEKRTMVFYEGRAPNGRKTEWKMNEFKA 66 57899********************855666*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	26.564	1	98	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-21	6	97	IPR003441	NAC domain
Pfam	PF02365	8.4E-7	11	65	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MQEGEARGGR PRRLTSNGYW KATGSPCPVY SSNSNRCIGE KRTMVFYEGR APNGRKTEWK 60 MNEFKAMEEV EEEEEATLSN GGHTRLRQEF SLCRVYKNKF VRAFDRRPIG VEMGEMRAQA 120 TPFNEVTSSH QNPSTVEIAC SDDISSLGDH GQPFQTGEAS NMASMDIDNE PIWDWEQFDW 180 C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-13	8	99	86	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-13	8	99	86	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-13	8	99	86	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-13	8	99	86	166	NO APICAL MERISTEM PROTEIN
3swm_A	7e-13	8	99	89	169	NAC domain-containing protein 19
3swm_B	7e-13	8	99	89	169	NAC domain-containing protein 19
3swm_C	7e-13	8	99	89	169	NAC domain-containing protein 19
3swm_D	7e-13	8	99	89	169	NAC domain-containing protein 19
3swp_A	7e-13	8	99	89	169	NAC domain-containing protein 19
3swp_B	7e-13	8	99	89	169	NAC domain-containing protein 19
3swp_C	7e-13	8	99	89	169	NAC domain-containing protein 19
3swp_D	7e-13	8	99	89	169	NAC domain-containing protein 19
3ulx_A	9e-13	8	99	84	169	Stress-induced transcription factor NAC1
4dul_A	7e-13	8	99	86	166	NAC domain-containing protein 19
4dul_B	7e-13	8	99	86	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0768s0010.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216672	2e-77	AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004197.1	1e-101	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	B9HBX6	6e-97	B9HBX6_POPTR; Uncharacterized protein
STRING	POPTR_0006s22580.1	1e-97	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-42	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	SapurV1A.0768s0010.2.p