PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0772s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 462aa    MW: 51402.4 Da    PI: 6.0351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0772s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-17141187148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g WT+eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  SapurV1A.0772s0150.1.p 141 KGQWTEEEDRKLIRLVKQFGVRKWAQIAERVA-GRAGKQCRERWHNHL 187
                             799*****************************.*************97 PP
2Myb_DNA-binding53.94.3e-17193235145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             +++W++eE+ +lv+a+++ G++ W+ Ia+ +  gRt++ +k++w+
  SapurV1A.0772s0150.1.p 193 KDSWSEEEERILVEAHTKVGNR-WAEIAKLIR-GRTENAIKNHWN 235
                             679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.471136191IPR017930Myb domain
SuperFamilySSF466892.59E-29139234IPR009057Homeodomain-like
SMARTSM007172.6E-17140189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-27142194IPR009057Homeodomain-like
CDDcd001672.24E-16144187No hitNo description
PfamPF139217.9E-19144201No hitNo description
SMARTSM007171.5E-15192240IPR001005SANT/Myb domain
PROSITE profilePS5129420.035192242IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-20195240IPR009057Homeodomain-like
CDDcd001671.27E-12195238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEGGGEGGVG DRFSHQNSQN SRSIYQPTPP LTATDMFLFR HQSHYTPQYI QEDDENKETL  60
VSTNGSCVFS PPRGAITAAP WPSFSETGFA DGLFVDGDRH TWTYEGNPDG GLSGEVNDVS  120
GKSCKGTGKK TKKGSCSTLI KGQWTEEEDR KLIRLVKQFG VRKWAQIAER VAGRAGKQCR  180
ERWHNHLRPD IKKDSWSEEE ERILVEAHTK VGNRWAEIAK LIRGRTENAI KNHWNATKRR  240
QNSRRKQKQT EKQTSTSVTP TPSTATNTPS SSISEDPSSQ FNYFLPELTE SATEDSPSLL  300
ALSDNDDELL FIQNFFANKS KGKVATENPI MQVDSFNADS INDSFSLDSC GLYQNNGGQQ  360
IKDSRDISFD SSTLNPKVYT NGFEAATDQK TPTYNNHLRS DLYLSYLLNG ATNAPGSPYT  420
EYGHSSTNME MDQTYSLSGK KEMDLIEMIS SSQFSQGINN I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-461392412104C-Myb DNA-Binding Domain
1msf_C7e-461392412104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0772s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032290.10.0PREDICTED: transcription factor MYB98
TrEMBLB9HP580.0B9HP58_POPTR; Uncharacterized protein
STRINGPOPTR_0009s04870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-63myb domain protein 119