PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0787s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 235aa    MW: 26633.1 Da    PI: 8.3637
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0787s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32157215159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  SapurV1A.0787s0140.1.p 157 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDSCRVKKRVERLAEDPRMVITTYEGRHAHS 215
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33142215IPR003657WRKY domain
SuperFamilySSF1182902.22E-28150216IPR003657WRKY domain
PROSITE profilePS5081129.574152217IPR003657WRKY domain
SMARTSM007741.8E-36157216IPR003657WRKY domain
PfamPF031063.8E-25158214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAATSQATLN QQPLFEDQDM PPQMGFFSFP SQYLTYPQLA SCQQSLKGFI IPPSLAVDAP  60
CTTNLTETLL LSSATNKQRE EDTIASDLEG PHLLSLQRSS ANLWAWGEVN DCSNSKRSGS  120
GGDHLGVSTI KMKKIKAWRK VREPRFCFKT LSEVDVLDDG YKWRKYGQKV VKNTQHPRSY  180
YRCTQDSCRV KKRVERLAED PRMVITTYEG RHAHSPSHDL EESQTPSQFN IFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27148214874Probable WRKY transcription factor 4
2lex_A2e-27148214874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0787s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1452930.0EF145293.1 Populus trichocarpa clone WS01122_O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021959.11e-148PREDICTED: probable WRKY transcription factor 13
RefseqXP_011021960.11e-148PREDICTED: probable WRKY transcription factor 13
RefseqXP_011021961.11e-148PREDICTED: probable WRKY transcription factor 13
RefseqXP_011021962.11e-148PREDICTED: probable WRKY transcription factor 13
RefseqXP_011021963.11e-148PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB72e-59WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA9PAR41e-147A9PAR4_POPTR; WRKY family protein
STRINGPOPTR_0007s06930.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-58WRKY DNA-binding protein 13