PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0790s0110.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 627aa MW: 71432.2 Da PI: 6.4472

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0790s0110.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.8e-07	519	566	2	46
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 +rWTteE+ +++d+v++ + W+ +++++ ++t+++++s++++ SapurV1A.0790s0110.2.p 519 LRWTTEEEMRFKDVVRLNPLSagkcFWDNKSKYFP-RKTREELISYYFN 566 79**************9889999******.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01014	6.9E-8	34	124	No hit	No description
PROSITE profile	PS51011	16.45	37	128	IPR001606	ARID DNA-binding domain
SMART	SM00501	2.2E-8	38	129	IPR001606	ARID DNA-binding domain
SuperFamily	SSF46774	3.53E-14	59	132	IPR001606	ARID DNA-binding domain
Pfam	PF01388	2.5E-8	60	124	IPR001606	ARID DNA-binding domain
Gene3D	G3DSA:1.10.150.60	5.1E-12	61	136	IPR001606	ARID DNA-binding domain
CDD	cd00167	5.12E-5	520	566	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MRYRGTGGCP DISMKDEIKE CIVVDSDEDG YDYDCEDRVV CLFDEVVSIF LNEAADGGCI 60 RPIPALLGDG QSLDLFKLYW VVRKRGGFDL VNGFWNFVAK ELGLDLLFSP SVKLIYMKYL 120 YELEKFMKIC SDEKLRKELH QCDGNLSFSL LELEMQFRSL LSLIGDRKQG DGKFASLGYK 180 VNGRYIETAI GKRKEVFLDT KDVHQIPNYV GNRNGDDDDE KSQGEKKNYS NCSDDDVVIL 240 DPSIAKKEFN SRKRKQEPLT RMLNWLIQIA KCPDDPFIGV IHRGDELWSQ AIRAREALFQ 300 RQYVNPNIEQ SSAQVCNMNL QSNQKMCPSM FEDVSFPSEQ SAERSRCSKR PPAPEKPQLC 360 YCCNSCSAHQ SKSASLLKTK CENACKEQEH ALKVQELVIG DLSSKHTTLS GSEDKHVRRH 420 VAVGPLFQAE VPEWTGMVSE SASKWLGTRF WPSKYENHNV PVAMDPIGKG GISLCGCQLP 480 GSVGCARFHT AEKRMKLKLE LGPLFYHWRF DHMGEEVSLR WTTEEEMRFK DVVRLNPLSA 540 GKCFWDNKSK YFPRKTREEL ISYYFNAYLV RCRSYQNRVT PKYTDSDDDD ETKFGSLSDA 600 YGHEALTVPG ATMLICSENK QCTDFT*

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MRYRGTGGCP DISMKDEIKE CIVVDSDEDG YDYDCEDRVV CLFDEVVSIF LNEAADGGCI  60
RPIPALLGDG QSLDLFKLYW VVRKRGGFDL VNGFWNFVAK ELGLDLLFSP SVKLIYMKYL  120
YELEKFMKIC SDEKLRKELH QCDGNLSFSL LELEMQFRSL LSLIGDRKQG DGKFASLGYK  180
VNGRYIETAI GKRKEVFLDT KDVHQIPNYV GNRNGDDDDE KSQGEKKNYS NCSDDDVVIL  240
DPSIAKKEFN SRKRKQEPLT RMLNWLIQIA KCPDDPFIGV IHRGDELWSQ AIRAREALFQ  300
RQYVNPNIEQ SSAQVCNMNL QSNQKMCPSM FEDVSFPSEQ SAERSRCSKR PPAPEKPQLC  360
YCCNSCSAHQ SKSASLLKTK CENACKEQEH ALKVQELVIG DLSSKHTTLS GSEDKHVRRH  420
VAVGPLFQAE VPEWTGMVSE SASKWLGTRF WPSKYENHNV PVAMDPIGKG GISLCGCQLP  480
GSVGCARFHT AEKRMKLKLE LGPLFYHWRF DHMGEEVSLR WTTEEEMRFK DVVRLNPLSA  540
GKCFWDNKSK YFPRKTREEL ISYYFNAYLV RCRSYQNRVT PKYTDSDDDD ETKFGSLSDA  600
YGHEALTVPG ATMLICSENK QCTDFT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	255	SRKRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0790s0110.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304507.3	0.0	AT-rich interactive domain-containing protein 2
TrEMBL	A0A2K2B698	0.0	A0A2K2B698_POPTR; Uncharacterized protein
STRING	POPTR_0003s12990.1	0.0	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	SapurV1A.0790s0110.2.p