PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0802s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 179aa    MW: 19753.2 Da    PI: 6.6934
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0802s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.77.2e-15411281197
                   NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96 
                             +++t   + e+P  rik+i+k d+d++++ a+a  l+s + elf+  l+ +s   a e+kr+ +k   i aa +r + + dfl+d  
  SapurV1A.0802s0250.1.p  41 NTETTTTRPEFPTGRIKRIMKLDKDINKVNADALFLVSSSTELFLRFLAEKSAEVAIEKKRKIVKLDHIRAAAKRHHpTSDFLLDSL 127
                             4445556789************************************************************9999875389*****98 PP

                   NF-YC  97 p 97 
                             p
  SapurV1A.0802s0250.1.p 128 P 128
                             7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.01E-1744128IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-1845112IPR009072Histone-fold
PfamPF008083.2E-1850112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGESEENNTE TKTNIQTLHP SNFPPPQSIS HSPMGESEEK NTETTTTRPE FPTGRIKRIM  60
KLDKDINKVN ADALFLVSSS TELFLRFLAE KSAEVAIEKK RKIVKLDHIR AAAKRHHPTS  120
DFLLDSLPLP AESSEKPASD NTSGRTVTDK PAPAGTRRID QFFSKAASEE LPVLINES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0802s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297836.22e-85nuclear transcription factor Y subunit C-5
TrEMBLB9GMJ45e-84B9GMJ4_POPTR; NF-YC family protein
STRINGPOPTR_0001s13970.19e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-46nuclear factor Y, subunit C13