PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0804s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 361aa    MW: 40928 Da    PI: 5.2211
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0804s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0690113226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             k  lC ff + G+C  G +CkF+H+
  SapurV1A.0804s0070.1.p  90 KSILCEFFKA-GQCAKGFKCKFSHD 113
                             6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-488114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15988115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003564.3158195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.944158196IPR000571Zinc finger, CCCH-type
PfamPF165438.0E-18215294IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPPKQQSKTD LAKKQKIVED KTFGLKNKNK SKNVQKYVQS LKQNVQPQLD PSKLAAKKKK  60
EEEKAKEKEL NELFKVAVSQ PKVPVGVDPK SILCEFFKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DEETMEDWDQ ETLEKVVESK GKEYQQNKPT DIVCKYFLEA VEKRQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALLD EEAQKISIEE EIENQRAKTT TSTPITSELF  240
MQWKKKKIEE RDAGLAALRA ERAKNDRMSG RELFLLDASV FVDDAEAYEK YQREEEPDGA  300
DQKVNDKSTA DGPSTSAAAA VGDAEDLTDD DDELDMDELN ELEASLSKTS IQIAERSGSH  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0804s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006388158.10.0zinc finger CCCH domain-containing protein 11 isoform X2
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLU7DY530.0U7DY53_POPTR; Zinc finger family protein
STRINGPOPTR_0308s00200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-161C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]