PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0817s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 549aa    MW: 61326.8 Da    PI: 6.6921
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0817s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.52.5e-931785472374
                    GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             ++ L+++A++++s++l+laq +L+rl+++ +sp+g+p+qR+a++f+eAL++ l+    ++  + +p   s++n+++++ a+k+f+ +
  SapurV1A.0817s0080.1.p 178 IQELIKAADCFDSNELQLAQVILERLNHRlQSPNGKPLQRAAFFFKEALQSLLTT--GSTRPQTNPVVPSWSNTVQTIRAYKAFFSI 262
                             689*************************99************************9..33333445555556679************* PP

                    GRAS  88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg.....ppslRiTgvgspesgskeeleetgerLakf 168
                             sPi+ f+ +t+ qaIl++++g+   +H+iDfdi+ G ++++L+++L +++++     +p lRiT+v+ +  +   e++ ++erL++f
  SapurV1A.0817s0080.1.p 263 SPIPMFTDFTTSQAILDSLNGDsVFLHVIDFDIGFGCHYASLMRELVEKADScnkltTPLLRITAVVTE--DTVFETKLIKERLSQF 347
                             *********************95667***********************955555669**********4..5999************ PP

                    GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...s 252
                             A+el+++f+++++   ++e+l+++++++ +gE++aV l+  + r l   +s+++  + +++ ++++sP +v++v++e  ++s+   s
  SapurV1A.0817s0080.1.p 348 AHELKIRFHIEFVPFLTFEMLSFKAIKFFEGEKIAVLLSPTILRHL---GSTNN-VTMFVNDFRRVSPSLVIFVDSEGWTGSGtglS 430
                             ************9999************************999999...44444.566*******************7775554559 PP

                    GRAS 253 Flerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                             F + f+++l +ys++f+sl+a + ++  ++++k+E  ll+++i  +v   g++      tl+ Wre + +aG +pv+ls++a  qa+
  SapurV1A.0817s0080.1.p 431 FRRNFVNCLGFYSMMFESLDAAVVTAGgDWARKIEMSLLKPKILAAVEGCGRR------TLSPWREVFAAAGVRPVQLSQFADFQAE 511
                             *******************666555445*******************999997......9*************************** PP

                    GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +ll kv++ g+ v +++++lvl+W++rpL+++SaW+
  SapurV1A.0817s0080.1.p 512 SLLGKVQVSGFCVAKRQAELVLCWRNRPLIATSAWK 547
                             ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.618151527IPR005202Transcription factor GRAS
PfamPF035148.7E-91178547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKVPVPSPQN NSSSTNQSQN PKPVSCNNTS NNSRNISFSP SNPSLCYEPT SVLDLRRSPS  60
PARAGKPASA TDPLEWEDHV LQTLDWDSIM RELDFHDDSA PALIKNFPQF GPCGEPQIQI  120
HNLPEFTASQ QIDATQCFHS EFNDMYINSI PTHNLTSLDL SHSFHNNTGN WNVGFDFIQE  180
LIKAADCFDS NELQLAQVIL ERLNHRLQSP NGKPLQRAAF FFKEALQSLL TTGSTRPQTN  240
PVVPSWSNTV QTIRAYKAFF SISPIPMFTD FTTSQAILDS LNGDSVFLHV IDFDIGFGCH  300
YASLMRELVE KADSCNKLTT PLLRITAVVT EDTVFETKLI KERLSQFAHE LKIRFHIEFV  360
PFLTFEMLSF KAIKFFEGEK IAVLLSPTIL RHLGSTNNVT MFVNDFRRVS PSLVIFVDSE  420
GWTGSGTGLS FRRNFVNCLG FYSMMFESLD AAVVTAGGDW ARKIEMSLLK PKILAAVEGC  480
GRRTLSPWRE VFAAAGVRPV QLSQFADFQA ESLLGKVQVS GFCVAKRQAE LVLCWRNRPL  540
IATSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2218354625378Protein SCARECROW
5b3h_A4e-2218354624377Protein SCARECROW
5b3h_D4e-2218354624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0817s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383233.20.0scarecrow-like protein 15
SwissprotO232101e-154SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2K2AFW50.0A0A2K2AFW5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-156GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]